Browse Element(s) Details


Os.6844.1.S1_x_at

Description gb:AK108381.1
DB_XREF= gi:32993590
TID=Os.6844.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E06, full insert sequence.
FL= gb:AK108381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0581010/11expressed protein
LOC_Os12g061901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05780OsAffx.19517.2.S1_at11/1111+2661590..2662318uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os11g05790OsAffx.24994.1.S1_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05790OsAffx.24994.2.S1_s_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05800OsAffx.30833.1.S1_at10/1111+2678664..2683254TB2/DP1, HVA22 family protein, expressed
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein
LOC_Os11g05820Os.55076.1.S1_at11/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05820OsAffx.6089.1.S1_at1/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05830OsAffx.18695.1.S1_at11/1111+2704004..2704342hypothetical protein
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6844.1.S1_x_at--1093--5871Chr11:2684418..2684442 (25 bp)
GAGCGCGAGGGTACACCAGCCTCCG
LOC_Os11g05810
Os.6844.1.S1_x_at--23--7631NONE
GGGACATCCTCTCGTCGCCGAAGTA
NONE
Os.6844.1.S1_x_at--133--1191Chr11:2684373..2684397 (25 bp)
AGTACGCCGCGTCGAGCAAGTCCAG
LOC_Os11g05810
Os.6844.1.S1_x_at--569--7631Chr11:2684295..2684319 (25 bp)
GGGACGTGCACATGATACGCCACCC
LOC_Os11g05810
Os.6844.1.S1_x_at--246--312Chr12:2934204..2934228 (25 bp)
ATACGCCACCCGCTGGTGAAGCACG
LOC_Os12g06190
Os.6844.1.S1_x_at--901--4551Chr11:2684131..2684155 (25 bp)
GCGCTCTTCGGACGGTGACTGACCT
LOC_Os11g05810
Os.6844.1.S1_x_at--188--1891Chr11:2684080..2684104 (25 bp)
ACGTCTCTTGACCTTTTGACCGATT
LOC_Os11g05810
Os.6844.1.S1_x_at--352--271Chr11:2683979..2684003 (25 bp)
ATATGGGTTGTAATTAGTTTCTGTA
LOC_Os11g05810
Os.6844.1.S1_x_at--24--8911Chr11:2683927..2683951 (25 bp)
TGAGACAGAGAGATGATGGCAACAA
LOC_Os11g05810
Os.6844.1.S1_x_at--949--2991Chr11:2683890..2683914 (25 bp)
AATGATTTGCTTGCTAACACCTGAT
LOC_Os11g05810
Os.6844.1.S1_x_at--653--10011Chr11:2683861..2683885 (25 bp)
TAGCTTGAGGGCAATGCATTTGTGA
LOC_Os11g05810
Target Sequence 
GAGCGCGAGGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCCAGCTCCCCCGCC
GACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGACGTGCACATGATACGCCACCCGCTGGTGAAGCA
CGCGGCGTACGCCTACCTCCAGCTGACGCCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCC
GCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTGACCTCGCCGTCT
CCGGCGAGACACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTNCTTGCCTTTTTTTTNAATTTCTGTTTTTTTACAG
TGTATTATTTAGAGCAGAAATTGGATTTTNCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAG
GATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATNGGTTAG
CTTGAGGGCAATGCATTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6844.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis