Browse Element(s) Details


Os.6851.1.S1_at

Description gb:AK073086.1
DB_XREF= gi:32983109
TID=Os.6851.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for glutathione s-transferase (gst2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022J16, full insert sequence.
FL= gb:AK073086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g355909/11Glutathione S-transferase zeta-class 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6851.1.S1_at--334--10511Chr02:21406274..21406298 (25 bp)
TTCACAATCTTACCGTACTGGTAAG
LOC_Os02g35590
Os.6851.1.S1_at--946--1771Chr02:21406263..21406287 (25 bp)
ACCGTACTGGTAAGAACTGATTTGC
LOC_Os02g35590
Os.6851.1.S1_at--329--5471Chr02:21406250..21406274 (25 bp)
GAACTGATTTGCATTCAATTTCTTA
LOC_Os02g35590
Os.6851.1.S1_at--923--4931Chr02:21406243..21406264 (22 bp)
GCATTCAATTTCTTACTGCCATAGG
LOC_Os02g35590
Os.6851.1.S1_at--642--9731Chr02:21406027..21406260 (25 bp)
TCAATTTCTTACTGCCATAGGTTCA
LOC_Os02g35590
Os.6851.1.S1_at--913--10551NONE
TTCTTACTGCCATAGGTTCATTGAG
NONE
Os.6851.1.S1_at--203--10471Chr02:21406019..21406252 (25 bp)
TTACTGCCATAGGTTCATTGAGAAG
LOC_Os02g35590
Os.6851.1.S1_at--360--272Chr07:27454846..27454874 (23 bp)
ATATGTTTTTCAAAGCTTCTGTCCA
NONE
Os.6851.1.S1_at--734--6811Chr02:21404969..21404993 (25 bp)
GTTTTTCAAAGCTTCTGTCCAAATA
LOC_Os02g35590
Os.6851.1.S1_at--119--4911Chr02:21404959..21404983 (25 bp)
GCTTCTGTCCAAATAAATGACCCTT
LOC_Os02g35590
Os.6851.1.S1_at--475--9811Chr02:21404946..21404970 (25 bp)
TAAATGACCCTTAAAATTGCTAGCC
NONE
Target Sequence 
TTCACAATCTTACCGTACTGGTAAGAACTGATTTGCATTCAATTTCTTACTGCCATAGGTTCATTGAGAAGAAGGTTGGT
ACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGC
TGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTT
TTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCA
CTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTT
GTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTC
AAAGCTTCTGTCCAAATAAATGACCCTTAAAATTGCTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis