Browse Element(s) Details


Os.6851.2.S1_x_at

Description gb:AJ486976.1
DB_XREF= gi:20975737
TID=Os.6851.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for glutathione s-transferase (gst2 gene)
DEF=Oryza sativa (japonica cultivar-group) partial mRNA for glutathione s-transferase (gst2 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3559011/11Glutathione S-transferase zeta-class 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6851.2.S1_x_at--30--9011Chr02:21406673..21406692 (20 bp)
TGAAGGCCTTGAATCTCCAGATAGC
LOC_Os02g35590
Os.6851.2.S1_x_at--201--6911Chr02:21406296..21406320 (25 bp)
GTATGCTCTGGAATTCAACCTCTTC
LOC_Os02g35590
Os.6851.2.S1_x_at--240--7651Chr02:21405981..21406005 (25 bp)
GGGAGAGCATCCCATGGACTCAACA
LOC_Os02g35590
Os.6851.2.S1_x_at--385--6391Chr02:21405958..21405977 (20 bp)
GATCGACAGAGGTTTCGCAGCTGCT
LOC_Os02g35590
Os.6851.2.S1_x_at--170--9331Chr02:21405718..21405738 (21 bp)
TCGCAGCTGCTGAGAACCTAGTAAA
LOC_Os02g35590
Os.6851.2.S1_x_at--286--1151Chr02:21405342..21405684 (25 bp)
AGTCCGATTGGCAGACGTATTCCTC
LOC_Os02g35590
Os.6851.2.S1_x_at--737--10131Chr02:21405305..21405329 (25 bp)
TATGCAGCAGTGACTCGTTTTCAAA
LOC_Os02g35590
Os.6851.2.S1_x_at--593--731Chr02:21405191..21405213 (23 bp)
ATGTTAAATTATCCCACTCTCGCGA
LOC_Os02g35590
Os.6851.2.S1_x_at--487--3771Chr02:21405175..21405199 (25 bp)
CTCTCGCGAGGCTCCATGAGGAGTA
LOC_Os02g35590
Os.6851.2.S1_x_at--1114--2391Chr02:21405146..21405170 (25 bp)
AAACATCCAGCATTTCAAGCAGCAC
LOC_Os02g35590
Os.6851.2.S1_x_at--592--5091Chr02:21405125..21405149 (25 bp)
GCACTCCCAGACAGACAACCAGATG
LOC_Os02g35590
Target Sequence 
TGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTNCCGTACTGAGGTTC
ATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAA
CCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCNCCTCAGATTT
ATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACAT
CCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6851.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis