Browse Element(s) Details


Os.6899.2.S1_x_at

Description gb:AK108476.1
DB_XREF= gi:32993685
TID=Os.6899.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E11, full insert sequence.
FL= gb:AK108476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1697010/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6899.2.S1_x_at--345--5651Chr01:9702210..9702234 (25 bp)
GACAGCTATGCTGGTTACCATTCAG
LOC_Os01g16970
Os.6899.2.S1_x_at--1037--6311Chr01:9702156..9702180 (25 bp)
GATGAAGACTTCTCACATGAATCAG
LOC_Os01g16970
Os.6899.2.S1_x_at--890--4991Chr01:9702103..9702127 (25 bp)
GCATGTTGCGTCATACAAGTCTGAT
LOC_Os01g16970
Os.6899.2.S1_x_at--889--10531Chr01:9701962..9701985 (24 bp)
TTCAGATTTCACTGCCTCTGGGCAA
LOC_Os01g16970
Os.6899.2.S1_x_at--985--3771Chr01:9701947..9701971 (25 bp)
CTCTGGGCAAGCATCATGGCTGGAT
LOC_Os01g16970
Os.6899.2.S1_x_at--212--11Chr01:9701887..9701911 (25 bp)
ATTCAACTTTTTCAAGACCCCTGTG
LOC_Os01g16970
Os.6899.2.S1_x_at--785--5811Chr01:9701794..9701896 (25 bp)
GACCCCTGTGGATTTATCTGAGGCT
LOC_Os01g16970
Os.6899.2.S1_x_at--870--10131Chr01:9701780..9701882 (25 bp)
TATCTGAGGCTTCTCGTGTTCGGAA
LOC_Os01g16970
Os.6899.2.S1_x_at--317--2691Chr01:9701733..9701757 (25 bp)
AAGCTGTCCAAGATTCAGTCTAGGA
LOC_Os01g16970
Os.6899.2.S1_x_at--861--7151Chr01:9701716..9701740 (25 bp)
GTCTAGGATATCCACTCTGACAGAT
LOC_Os01g16970
Os.6899.2.S1_x_at--837--1071NONE
AGGGCAAGTATGTTTGATGCTCATG
NONE
Target Sequence 
GACAGCTATGCTGGTTACCATTCAGAAGTTGAGGATGACAGACATAAATATGATGATGAAGACTTCTCACATGAATCAGA
TGATGAATATGTCGATGATCATGATGAGCATGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAG
ATTTCACTGCCTCTGGGCAAGCATCATGGCTGGATAAAATTCAGCAAACTGTACAGAATGTTTTACGAACATTCAACTTT
TTCAAGACCCCTGTGGATTTATCTGAGGCTTCTCGTGTTCGGAAGGAGTATGATGATGCAAGCTCAAAGCTGTCCAAGAT
TCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACATGACTTTGGTAAGGAGAAGGAGTTCTATTACTTTTATGATC
AGTGCTTTGAGAGCAAGGAGGGCAAGTATGTTTGATGCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6899.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis