Browse Element(s) Details


Os.7026.1.S1_x_at

Description gb:AK069283.1
DB_XREF= gi:32979307
TID=Os.7026.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012J07, full insert sequence.
FL= gb:AK069283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1896011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18940NANA12+10988501..10988821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18950OsAffx.20801.1.S1_at1/1112+10991839..10992405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18960Os.7026.2.S1_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed
LOC_Os12g18960Os.7026.1.S1_x_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed
LOC_Os12g18970OsAffx.13838.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18970OsAffx.16344.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18970OsAffx.26058.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18980NANA12+11013110..11013619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18990NANA12+11020707..11021345retrotransposon protein, putative, unclassified
LOC_Os12g19000NANA12+11023499..11029196retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7026.1.S1_x_at--426--10611Chr12:10997548..10997696 (25 bp)
TTCTGGTTCATCGTTCAGGCCAAAG
LOC_Os12g18960
Os.7026.1.S1_x_at--798--8031Chr12:10997516..10997540 (25 bp)
GGAGTTCCCATCTAAGTACTTCTCG
LOC_Os12g18960
Os.7026.1.S1_x_at--72--2851Chr12:10997503..10997527 (25 bp)
AAGTACTTCTCGACGATGCTCGCAT
LOC_Os12g18960
Os.7026.1.S1_x_at--271--7191Chr12:10997423..10997447 (25 bp)
GTCGGCATGGGCACTCCACTGGGAT
LOC_Os12g18960
Os.7026.1.S1_x_at--910--1591Chr12:10997395..10997418 (24 bp)
AGCTGATCACCATCATCTATTCGGG
LOC_Os12g18960
Os.7026.1.S1_x_at--42--1751Chr12:10997210..10997234 (25 bp)
ACCTTCTGCTTGATCACGTGGGCGG
LOC_Os12g18960
Os.7026.1.S1_x_at--1063--731Chr12:10997156..10997180 (25 bp)
ATGTTCAACTCGCTTGCGCTGATCA
LOC_Os12g18960
Os.7026.1.S1_x_at--210--7271Chr12:10997123..10997147 (25 bp)
GTCCTTGACTCGATGCTGCTTGGAA
LOC_Os12g18960
Os.7026.1.S1_x_at--535--3531Chr12:10996809..10997118 (25 bp)
CATCTCTGTCGGGAGCTTGCTAGGG
LOC_Os12g18960
Os.7026.1.S1_x_at--1128--711Chr12:10996778..10996802 (25 bp)
ATGATAATCATTGGCCTCTATTCCT
LOC_Os12g18960
Os.7026.1.S1_x_at--569--5171Chr12:10996713..10996737 (25 bp)
GCAAGTTCCCACGAATACAGAGGCA
LOC_Os12g18960
Target Sequence 
TTCTGGTTCATCGTTCAGGCCAAAGTGAACAAGGAGTTCCCATCTAAGTACTTCTCGACGATGCTCGCATGCTTGATGGG
GACAATCCAGGCGGTGGTGATCGGGATCGCCGTCGACCGGGACCGGTCGGCATGGGCACTCCACTGGGATCTGCAGCTGA
TCACCATCATCTATTCGGGGGTTTTCAACACGGCTGCCACCTTCTGCTTGATCACGTGGGCGGTGTCACGGCGAGGGCCA
ACCTACCCCTCCATGTTCAACTCGCTTGCGCTGATCATCACCGTCGTCCTTGACTCGATGCTGCTTGGAAGCGACATCTC
TGTCGGGAGCTTGCTAGGGGCATTTATGATAATCATTGGCCTCTATTCCTTCCTCTGGGGAAAAGGGAAGGAGATAAAAG
AGCAGCAGCAGCAAGTTCCCACGAATACAGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7026.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis