Browse Element(s) Details


Os.7077.1.S1_at

Description gb:AK112067.1
DB_XREF= gi:37988730
TID=Os.7077.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D09, full insert sequence.
FL= gb:AK112067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2796011/11glycosyl hydrolase family 85 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7077.1.S1_at--283--71Chr05:16235178..16235202 (25 bp)
ATTGCATTACCATGCATCGCTTGGC
LOC_Os05g27960
Os.7077.1.S1_at--489--531Chr05:16235163..16235187 (25 bp)
ATCGCTTGGCCATGTTAGCATTCGA
LOC_Os05g27960
Os.7077.1.S1_at--705--1331Chr05:16235124..16235148 (25 bp)
AGAGTTCCCTCCAGCAAGATCATGG
LOC_Os05g27960
Os.7077.1.S1_at--379--2931Chr05:16235092..16235116 (25 bp)
AAGGCGATTACATCTCCTGGTCGAA
LOC_Os05g27960
Os.7077.1.S1_at--684--5211Chr05:16234936..16234960 (25 bp)
GAATTTTCCTTGGAGTTGCCAGCGT
LOC_Os05g27960
Os.7077.1.S1_at--504--6691Chr05:16234922..16234946 (25 bp)
GTTGCCAGCGTACAAGTCTTCTATG
LOC_Os05g27960
Os.7077.1.S1_at--813--4591Chr05:16234876..16234900 (25 bp)
GCGAAGTCACTGCTCTGAAATTTTT
LOC_Os05g27960
Os.7077.1.S1_at--847--10311Chr05:16234854..16234878 (25 bp)
TTTCATTCAACCGTGTGGGCGTGAT
LOC_Os05g27960
Os.7077.1.S1_at--33--9211Chr05:16234823..16234847 (25 bp)
TGCCAAGGACTGCACGAATGCCCAA
LOC_Os05g27960
Os.7077.1.S1_at--55--8751Chr05:16234768..16234792 (25 bp)
TGTAACATTTATCTGCCTACCTTGC
LOC_Os05g27960
Os.7077.1.S1_at--963--4731Chr05:16234745..16234769 (25 bp)
GCTGTTTTCAGTACTCTATGTTTTC
LOC_Os05g27960
Target Sequence 
ATTGCATTACCATGCATCGCTTGGCCATGTTAGCATTCGAAACACNTGAAGAAACAGAGTTCCCTCCAGCAAGATCATGG
GTGACGGAAGGCGATTACATCTCCTGGTCGAATGGTTCAGATGAATCTAAACTTGCAAGCCTGAAAATCAGTTGGGAACT
TGAAAATAAACAGCAGGCACCATTCATGAAGTACAATGTCTATGTTGAGAAGTTAACTGCAGACTCAAATGCAAAGGCTC
CCAGAATTTTCCTTGGAGTTGCCAGCGTACAAGTCTTCTATGTATCTGACCTAGAGGTCCCCAGCGAAGTCACTGCTCTG
AAATTTTTCATTCAACCGTGTGGGCGTGATGGGAGTTGCCAAGGACTGCACGAATGCCCAAAGTTCCATTTGGTTCCTGT
TGATTCTGCCATGTAACATTTATCTGCCTACCTTGCTGTTTTCAGTACTCTATGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis