Browse Element(s) Details


Os.7088.1.S1_at

Description gb:AU101625
DB_XREF= gi:9865875
DB_XREF=AU101625
CLONE=R0633
TID=Os.7088.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.7088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D24614(R2254),D23943(R0633),AU101625(R0633), AU162427(R2254)~uclacyanin 3-like protein (P0446F04.35), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0144011/11Plastocyanin-like domain containing protein, expressed
LOC_Os03g026701/11UDP-galactose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01440Os.7088.1.S1_at11/117+289331..290324Plastocyanin-like domain containing protein, expressed
LOC_Os07g01450OsAffx.16030.1.S1_at11/117+290941..292865DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
LOC_Os07g01460Os.31269.1.S1_at11/117+298003..299724expressed protein
LOC_Os07g01470NANA7+301163..301648expressed protein
LOC_Os07g01480Os.27830.1.S1_at11/117+304308..305321Oxygen evolving enhancer protein 3 containing protein, expressed
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005354molecular_functiongalactose transporter activity
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
GO:0015165molecular_functionpyrimidine nucleotide sugar transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7088.1.S1_at--1123--4391Chr07:289883..289907 (25 bp)
GCCACCAAGCCCAGGCACAAGAAGG
LOC_Os07g01440
Os.7088.1.S1_at--702--3351Chr07:290050..290074 (25 bp)
CACGCTCGCCGCAGGGATGGCATTG
LOC_Os07g01440
Os.7088.1.S1_at--668--4311Chr07:290076..290100 (25 bp)
CCTTCCTCGCCATGTGAGACTGAGA
LOC_Os07g01440
Os.7088.1.S1_at--658--5991Chr07:290091..290115 (25 bp)
GAGACTGAGACTATAGGCTCCATTT
LOC_Os07g01440
Os.7088.1.S1_at--603--10173Chr07:290119..290143 (25 bp)
TATTTTTTGGGCTCTGCTTAATTAA
LOC_Os07g01440
Os.7088.1.S1_at--499--9471Chr07:290131..290155 (25 bp)
TCTGCTTAATTAATCCCTTCCCTTA
LOC_Os07g01440
Os.7088.1.S1_at--694--9311Chr07:290144..290168 (25 bp)
TCCCTTCCCTTAATCATGTATGCAT
LOC_Os07g01440
Os.7088.1.S1_at--476--751Chr07:290159..290183 (25 bp)
ATGTATGCATGCCACTGCTAGCTAA
LOC_Os07g01440
Os.7088.1.S1_at--241--4412Chr07:290169..290193 (25 bp)
GCCACTGCTAGCTAAGCTGTTGAGA
LOC_Os07g01440
Os.7088.1.S1_at--675--2251Chr07:290193..290217 (25 bp)
AAATTTGCAGGCTTTTCGCTTCTTC
LOC_Os07g01440
Os.7088.1.S1_at--772--2171Chr07:290270..290294 (25 bp)
ACACTTGTACTCTCTCGACGGAATA
LOC_Os07g01440
Target Sequence 
GCCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGA
GGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGCCGTCGTCCGCGTCTGCTGCGTCAACCATCGCCATCAACG
TCGCCGCCACGCTCGCCGCAGGGATGGCATTGGCCTTCCTCGCCATGTGAGACTGAGACTATAGGCTCCATTTAATTATT
TTTTGGGCTCTGCTTAATTAATCCCTTCCCTTAATCATGTATGCATGCCACTGCTAGCTAAGCTGTTGAGAAATTTGCAG
GCTTTTCGCTTCTTCTTTTCCTTTTCCTTTTGATTAAATTATTAGTTTACGTACATTTATTTGTTGTACACTTGTACTCT
CTCGACGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis