Browse Element(s) Details


Os.7146.1.S1_at

Description gb:AK067804.1
DB_XREF= gi:32977822
TID=Os.7146.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119N07, full insert sequence.
FL= gb:AK067804.1 gb:AK104887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4518011/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7146.1.S1_at--689--3331Chr08:28241614..28241638 (25 bp)
CACTGCCGAAATTATACCCTCTGAA
LOC_Os08g45180
Os.7146.1.S1_at--217--4831Chr08:28241641..28241665 (25 bp)
GCTCATAGATACAACTGGTGCGGGT
LOC_Os08g45180
Os.7146.1.S1_at--272--4951Chr08:28241669..28241693 (25 bp)
GCATTTATCGGAGCAGTTCTCTACG
LOC_Os08g45180
Os.7146.1.S1_at--866--10571Chr08:28241685..28242116 (25 bp)
TTCTCTACGGTTTATGCTCTGGCAT
LOC_Os08g45180
Os.7146.1.S1_at--148--6351Chr08:28242129..28242153 (25 bp)
GATGCTGCCTTTTGCAGCTCAAGTG
LOC_Os08g45180
Os.7146.1.S1_at--748--4471Chr08:28242726..28242750 (25 bp)
GCCTGGTTGCCTATTGACTCGAGGA
LOC_Os08g45180
Os.7146.1.S1_at--389--6571Chr08:28242790..28242814 (25 bp)
GATTCATTGGATTGTGGGCGCCTTT
LOC_Os08g45180
Os.7146.1.S1_at--1158--1411Chr08:28242854..28242878 (25 bp)
AGAAAGCCGCCTGCAGTTGAAATCG
LOC_Os08g45180
Os.7146.1.S1_at--437--8671Chr08:28242956..28242980 (25 bp)
TGTGTGCTGTTGTTGCAAGGCCCAA
LOC_Os08g45180
Os.7146.1.S1_at--938--9951Chr08:28243025..28243049 (25 bp)
TACCCAATCATATACGGTCTCGTTG
LOC_Os08g45180
Os.7146.1.S1_at--421--7171Chr08:28243041..28243065 (25 bp)
GTCTCGTTGATTTTGTACCAGTGCA
LOC_Os08g45180
Target Sequence 
CACTGCCGAAATTATACCCTCTGAAGAGCTCATAGATACAACTGGTGCGGGTGATGCATTTATCGGAGCAGTTCTCTACG
GTTTATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGGCTGCTTNNGCNGGGTGCAGGGGTTTA
GGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCAATCT
GTGTTGGATTTGATTGGGATGGATTCATTGGATTGTGGGCGCCTTTGAAAAAGAAGAGATTAAGCATTTGAAATATGGAG
TAATAAGAAAGCCGCCTGCAGTTGAAATCGGTTCCTAAGTTGTATGTAAACATTGATTGTTGTTGCATACTGTCAATATA
CCTTGGCTTGTGTTAATAAGAGAGATTTGTGTGCTGTTGTTGCAAGGCCCAAGGTANGAGTGATTGGTGGGTTCTTGTGA
TGTTAAAGAGCAACATTACCCAATCATATACGGTCTCGTTGATTTTGTACCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis