Browse Element(s) Details


Os.7205.1.A1_at

Description gb:AK100326.1
DB_XREF= gi:32985535
TID=Os.7205.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079L21, full insert sequence.
FL= gb:AK100326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0774011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7205.1.A1_at--1014--7351Chr01:3711631..3711655 (25 bp)
GTGACAATCCAAGCTTTCATGCCAG
LOC_Os01g07740
Os.7205.1.A1_at--421--2631Chr01:3711497..3711521 (25 bp)
AACCTGGTGATGGTCTCAGCTTTCA
LOC_Os01g07740
Os.7205.1.A1_at--163--10531Chr01:3711032..3711062 (25 bp)
TTCATGCCAGGTTCTATAGCTCTTC
LOC_Os01g07740
Os.7205.1.A1_at--74--311Chr01:3711017..3711041 (25 bp)
ATAGCTCTTCTCGAGGCAGCGATCA
LOC_Os01g07740
Os.7205.1.A1_at--647--2411Chr01:3710983..3711007 (25 bp)
AAACAATGCTGGCTTTCGTGATAGA
LOC_Os01g07740
Os.7205.1.A1_at--717--6931Chr01:3710957..3710981 (25 bp)
GTAGGAGTCCTCCAAGCAATCGCAA
LOC_Os01g07740
Os.7205.1.A1_at--277--5351Chr01:3710928..3710952 (25 bp)
GAAGATCCTGGGTCCAAGGCTGTTG
LOC_Os01g07740
Os.7205.1.A1_at--1106--5391Chr01:3710834..3710858 (25 bp)
GAAGCTGTTCTCTTACCAAACTATA
LOC_Os01g07740
Os.7205.1.A1_at--166--3291Chr01:3710818..3710842 (25 bp)
CAAACTATACTATCGTGCGTGCTCC
LOC_Os01g07740
Os.7205.1.A1_at--70--2071Chr01:3710664..3710688 (25 bp)
ACTTCCTTGCTATCTATACCTGCTA
LOC_Os01g07740
Os.7205.1.A1_at--749--9971Chr01:3710648..3710672 (25 bp)
TACCTGCTACCGCTATGATCATGTG
LOC_Os01g07740
Target Sequence 
GTGACAATCCAAGCTTTCATGCCAGCAGCAACAACGATCAACCTGGTGATGGTCTCAGCTTTCATGCCAGGTTCTATAGC
TCTTCTCGAGGCAGCGATCAGAGCAGAACAAACAATGCTGGCTTTCGTGATAGAAGTAGGAGTCCTCCAAGCAATCGCAA
CCATGAAGATCCTGGGTCCAAGGCTGTTGGTGTCTCCAACTGGTAAGTGCTAACTGCAAGATGCAAACAGCATCATGATG
GTGACGAACAGAGTAGATGAAGCTGTTCTCTTACCAAACTATACTATCGTGCGTGCTCCCCCTGAAGCAAANNAGTGTGT
CCCAGAACTTAACTAACATAGGATAAGANNCTGTGGATCTTCTGCTGTGCAGATGTAGCGCACTTGATAATGTATGTCTG
GTGTTAGTCGTTTGTCAGACNTGGGGGCTCGGACTTCCTTGCTATCTATACCTGCTACCGCTATGATCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7205.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis