Browse Element(s) Details


Os.7207.1.S1_at

Description gb:AU108617
DB_XREF= gi:10794651
DB_XREF=AU108617
CLONE=C12715
TID=Os.7207.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7207 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47439 (A.thaliana) T47439 hypothetical protein T18B22.40 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g424648/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g255004/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein
LOC_Os03g42464Os.24032.2.S1_at11/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42464Os.7207.1.S1_at8/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein
LOC_Os03g42510OsAffx.32023.1.S1_at9/113+23602186..23605688transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7207.1.S1_at--1026--6693Chr02:31030543..31030567 (25 bp)
GTTCCTGGTGGTAAATTTTATCTCG
NONE
Os.7207.1.S1_at--100--2274Chr08:5990582..5990603 (22 bp)
AAATACTACTTGTTGCTGCTCATCG
NONE
Os.7207.1.S1_at--84--10692Chr02:31030649..31030673 (25 bp)
TTGCCATTGGGCAGGCGCTATGAAC
NONE
Os.7207.1.S1_at--880--894Chr08:5990661..5990680 (20 bp)
AGGCGCTATGAACCCTTGTGTGTTA
NONE
Os.7207.1.S1_at--1127--10832Chr02:31030676..31030700 (25 bp)
TTGTGTGTTACAGCTGCGACCCCAT
NONE
Os.7207.1.S1_at--288--2954Chr08:5990955..5990979 (25 bp)
AAGGCGATGGCTTCTATGCGAGTCT
NONE
Os.7207.1.S1_at--511--1151Chr03:23577979..23578003 (25 bp)
AGTCTGTTTGCCTCCTGTAATTAGA
LOC_Os03g42464
Os.7207.1.S1_at--622--9271Chr03:23577967..23577991 (25 bp)
TCCTGTAATTAGAAGTGGTTGGCCC
LOC_Os03g42464
Os.7207.1.S1_at--1125--7791Chr03:23577952..23577976 (25 bp)
TGGTTGGCCCTTGTAACCGCACTAA
NONE
Os.7207.1.S1_at--584--7051Chr03:23577940..23577964 (25 bp)
GTAACCGCACTAACAGCATGCTTGG
NONE
Os.7207.1.S1_at--367--2491Chr03:23577929..23577953 (25 bp)
AACAGCATGCTTGGTTTTTAATCTT
NONE
Target Sequence 
GTTCCTGGTGGTAAATTTTATCTCGTAGATGCTGGTTATGCAAATACTACTTGTTGCTGCTCATCGCCGCCGCCCGCCGG
CAACAACTTCTCTGAACCAAACANGATTGCCATTGGGCAGGCGCTATGAACCCTTGTGTGTTACAGCTGCGACCCCATTC
GCGGCGACCCAAATGCTAAGGTNTATGCAAGGAAGCAGNCAGGGGGCATCAGATCTACGCATAACNNACNGCAAGAGGAN
NNNNACCAAACCTGCNAATCAACGCGTCCTTGCCGATCTCTGCCGTGGCTCTTCTCGTTGTTGCCGTTGCGTCCTGTCAC
CTGGGCGGCGAAGGTGCATCCGGTGCCGGCGATCGATGTGGGAGAGGAGGTCCAGTACCCAATCATGGAGCCAGGAGAGG
AAGTGGTAGAGGAGATGGGATCAAAGGCGATGGCTTCTATGCGAGTCTGTTTGCCTCCTGTAATTAGAAGTGGTTGGCCC
TTGTAACCGCACTAACAGCATGCTTGGTTTTTAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis