Browse Element(s) Details


Os.7282.1.S1_at

Description gb:AK071610.1
DB_XREF= gi:32981633
TID=Os.7282.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104M07, full insert sequence.
FL= gb:AK071610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1200010/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7282.1.S1_at--677--9231Chr03:6265701..6265725 (25 bp)
TCCATGCTCTGGAAGCTCAGACAGT
LOC_Os03g12000
Os.7282.1.S1_at--148--5411Chr03:6265690..6265714 (25 bp)
GAAGCTCAGACAGTTATTGCATTTA
LOC_Os03g12000
Os.7282.1.S1_at--313--2711Chr03:6265579..6265603 (25 bp)
AAGCTTGCAAGATCAACTGTGCTGA
LOC_Os03g12000
Os.7282.1.S1_at--396--491Chr03:6265464..6265488 (25 bp)
ATCTGGATCTTCCAACAGACTCTAC
LOC_Os03g12000
Os.7282.1.S1_at--212--8631Chr03:6265388..6265412 (25 bp)
TGTGGTCACAATATGCGAAGAAACT
LOC_Os03g12000
Os.7282.1.S1_at--1037--2651Chr03:6265315..6265339 (25 bp)
AAGCCATGCGAATTCACGGAAGGCA
LOC_Os03g12000
Os.7282.1.S1_at--1031--3331Chr03:6265301..6265325 (25 bp)
CACGGAAGGCAAGTTGCTTGTTCAT
LOC_Os03g12000
Os.7282.1.S1_at--1101--6271Chr03:6265267..6265291 (25 bp)
GATGTAGAATAAGCTCTGCATTGTC
LOC_Os03g12000
Os.7282.1.S1_at--770--6791Chr03:6265217..6265241 (25 bp)
GTTATTTGTGTATGGGCATTTCTCA
LOC_Os03g12000
Os.7282.1.S1_at--795--7591Chr03:6265204..6265228 (25 bp)
GGGCATTTCTCATAGATTGTATTAT
LOC_Os03g12000
Os.7282.1.S1_at--134--2931Chr03:6265128..6265152 (25 bp)
AATGGGAATAGTTGTCTTTCCTGGG
NONE
Target Sequence 
TCCATGCTCTGGAAGCTCAGACAGTTATTGCATTTATGAACAACACCAAGCCATTGAAAGATGTTGTATTTAAGTTGGAG
GCCCGTGGGATGAAAGCTACTGAGCTACATGGAGATCTTGGAAAGCTTGCAAGATCAACTGTGCTGAAAAAGTTCAAGGA
TGGTGAATTCAGAGTTCTAGTTACAAATGAGTTGTCTGCCAGAGGACTGGACGTGCCAGAATGTGATCTTGTGATTAATC
TGGATCTTCCAACAGACTCTACACACTATGCCCACAGAGCTGGCCGAACGGGCCGTCTAGGGCGGAAAGGAACTGTGGTC
ACAATATGCGAAGAAACTGAAACATTTGTTGTANGAAAAATGCGCAAGCAATTAGCTGTACCCANCAAGCCATGCGAATT
CACGGAAGGCAAGTTGCTTGTTCATAATGAGGAAGATGTAGAATAAGCTCTGCATTGTCGAAATGACATTTAATGTCTTG
AAGTGTTATTTGTGTATGGGCATTTCTCATAGATTGTATTATCTTANAATGTTATCAACCGATGTTTTTTTGCTCGATAC
AAATATTCANGATAAATGGGAATAGTTGTCTTTCCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis