Browse Element(s) Details


Os.7289.2.S1_at

Description gb:AK073104.1
DB_XREF= gi:32983127
TID=Os.7289.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020F20, full insert sequence.
FL= gb:AK073104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1176011/11PDR5-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11730Os.35344.18.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730Os.35344.3.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730OsAffx.22940.5.S1_x_at3/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11790Os.17474.1.A1_at11/112+6092981..6095907Kelch motif family protein, expressed
LOC_Os02g11790OsAffx.24196.1.S1_at10/112+6092981..6095907Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7289.2.S1_at--1041--4811Chr02:6074843..6074867 (25 bp)
GCTCTACCATATGCATTTGCGCAGG
LOC_Os02g11760
Os.7289.2.S1_at--474--9051Chr02:6074905..6074929 (25 bp)
TGCAGTGTGCTTCCTTTATTATACG
LOC_Os02g11760
Os.7289.2.S1_at--676--431Chr02:6074983..6075007 (25 bp)
ATCTTCCTCCAGACTGTCGTGTATG
LOC_Os02g11760
Os.7289.2.S1_at--450--10091Chr02:6075004..6075028 (25 bp)
TATGGTCTGATCGTCTACAGCCTGA
LOC_Os02g11760
Os.7289.2.S1_at--527--8491Chr02:6075116..6075140 (25 bp)
TGGCAGTCGCCATGACACCAAACAG
LOC_Os02g11760
Os.7289.2.S1_at--1040--9191Chr02:6075150..6075174 (25 bp)
TGCCATAGTCTCTACTGCATTCTAT
LOC_Os02g11760
Os.7289.2.S1_at--903--10091Chr02:6075179..6075203 (25 bp)
TATGGAATATCTTTGCCGGCTTCCT
LOC_Os02g11760
Os.7289.2.S1_at--90--10551Chr02:6075231..6075255 (25 bp)
TTCATTCATTGTCCATACCAACCTT
LOC_Os02g11760
Os.7289.2.S1_at--827--1051Chr02:6075326..6075350 (25 bp)
AGGTGGTATTCCTGGGCATGCCCAG
LOC_Os02g11760
Os.7289.2.S1_at--1051--8491Chr02:6075351..6075375 (25 bp)
TGGCATGGACACTGTACGGACTTGT
LOC_Os02g11760
Os.7289.2.S1_at--698--6991Chr02:6075364..6075388 (25 bp)
GTACGGACTTGTTGCCTCACAATAT
LOC_Os02g11760
Target Sequence 
GCTCTACCATATGCATTTGCGCAGGTAAATGGTCATAGCTGCATATTTAAACAAAAAACAATTGCAGTGTGCTTCCTTTA
TTATACGGAAAAAAATCTAACAATTTATCCTTTCAACAGGTTCTTATTGAGATACCACACATCTTCCTCCAGACTGTCGT
GTATGGTCTGATCGTCTACAGCCTGATTGGCTTTGACTGGACAGTTGAAAAATTCTTCTGGTACATGTTCTTCATGTTCT
TCACCTTCATGTACTTCACATTCTATGGGATGATGGCAGTCGCCATGACACCAAACAGCGACATTGCTGCCATAGTCTCT
ACTGCATTCTATTGCATATGGAATATCTTTGCCGGCTTCCTAATCCCCCGACCAGTAAGTATCTGATATTCATTCATTGT
CCATACCAACCTTTAAGTCTTTTTTCTATACTGTTGATGCTGAAATATACATGGCTGGTTTGCAGAGGATACCAATATGG
TGGAGGTGGTATTCCTGGGCATGCCCAGTGGCATGGACACTGTACGGACTTGTTGCCTCACAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7289.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis