Browse Element(s) Details


Os.7327.1.S1_a_at

Description gb:AK099349.1
DB_XREF= gi:32984558
TID=Os.7327.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025E10, full insert sequence.
FL= gb:AK099349.1 gb:AK120099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3098010/11hypothetical protein
LOC_Os12g282901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g546401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified
LOC_Os10g31000Os.8950.1.S2_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31000Os.8950.1.S1_a_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31010OsAffx.19542.3.S1_x_at4/1110+15858680..15859324retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31020NANA10+15862719..15866051retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7327.1.S1_a_at--943--4231Chr10:15837866..15837890 (25 bp)
CCGTCAGCCGCTGTGTCCGATAGAA
NONE
Os.7327.1.S1_a_at--279--1971Chr10:15837302..15837326 (25 bp)
ACTGTTGTCGGTTCAACCAGATTCC
LOC_Os10g30980
Os.7327.1.S1_a_at--966--10491Chr10:15837291..15837315 (25 bp)
TTCAACCAGATTCCTACCCATTCGT
LOC_Os10g30980
Os.7327.1.S1_a_at--602--9952Chr09:16059528..16059552 (25 bp)
TACCCATTCGTGCAGGCCAGCTTAG
NONE
Os.7327.1.S1_a_at--667--10611Chr10:15837271..15837295 (25 bp)
TTCGTGCAGGCCAGCTTAGTATGGT
LOC_Os10g30980
Os.7327.1.S1_a_at--1065--8431Chr10:15837263..15837287 (25 bp)
GGCCAGCTTAGTATGGTTTTTCCTT
LOC_Os10g30980
Os.7327.1.S1_a_at--982--10051Chr10:15837255..15837279 (25 bp)
TAGTATGGTTTTTCCTTGCTACCTC
LOC_Os10g30980
Os.7327.1.S1_a_at--5--10393Chr09:16059559..16059583 (25 bp)
TTTTCCTTGCTACCTCCTCTTTGTG
NONE
Os.7327.1.S1_a_at--301--3771Chr10:15837230..15837254 (25 bp)
CTCTTTGTGCTACTCTGGATTGCTA
LOC_Os10g30980
Os.7327.1.S1_a_at--364--9092Chr12:16723795..16723825 (24 bp)
TGCTACTCTGGATTGCTACTCTGGA
LOC_Os12g28290
Os.7327.1.S1_a_at--95--3791Chr10:15837218..15837242 (25 bp)
CTCTGGATTGCTACTCTGGATTGAT
LOC_Os10g30980
Target Sequence 
CCGTCAGCCGCTGTGTCCGATAGAATCCTCCTCACGCGCCGCGAACCATCGATGGACCAGCTGAAGGAGCTCGGGTGGGC
CAAGCGGTGGAGCTCGCAGCCATACGTGTCGTGCTGCACGACATCTCTGCAAGAGCTCACCACGCTTGGGATAAAGCACG
TGGAGAACCTGGCGATTCCGAGTGTCCGAAATGATGTAAGGCCTGCTAAGCTTAAAAATGTATGCGTAGCTTTGTTTAAT
TATTTGGAAATTGCAATGGTGCAGCAGAGCATGATGATTTGATGGGGATTCTGGAATCAAGCATTGCAAAATTGCAAATG
CAGAAGAATAGTATTAGTGCCATAATTTGTTCAGAAGAATAGTCCCCCATTTTCCTTGTTGTGATCATGCAGGCAGCATT
TTTTTTCACTGTTGTCGGTTCAACCAGATTCCTACCCATTCGTGCAGGCCAGCTTAGTATGGTTTTTCCTTGCTACCTCC
TCTTTGTGCTACTCTGGATTGCTACTCTGGATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7327.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis