Browse Element(s) Details


Os.7330.1.S1_at

Description gb:AK106225.1
DB_XREF= gi:32991434
TID=Os.7330.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A04, full insert sequence.
FL= gb:AK065257.1 gb:AK098855.1 gb:AK106225.1 gb:AK070502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0545010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7330.1.S1_at--977--7571Chr02:2622759..2622783 (25 bp)
GGGCTGCAAACTGGCGTGTCATCAG
LOC_Os02g05450
Os.7330.1.S1_at--30--6871Chr02:2622788..2622811 (24 bp)
GTTTGGAGCCTCCTTTTGATAAAAT
LOC_Os02g05450
Os.7330.1.S1_at--55--8831NONE
TGATAAAATTCTTCCAACTACCCGC
NONE
Os.7330.1.S1_at--691--791Chr02:2623399..2623423 (25 bp)
ATGGGCGGCTTTGCAAACACTGTTC
LOC_Os02g05450
Os.7330.1.S1_at--777--10331Chr02:2623439..2623463 (25 bp)
TTTAGACGCCATTAATGCCCATCTG
LOC_Os02g05450
Os.7330.1.S1_at--518--6811Chr02:2623471..2623495 (25 bp)
GTTTTACAGTGAAGTGTCCCTCCAG
LOC_Os02g05450
Os.7330.1.S1_at--895--1091Chr02:2623483..2623636 (25 bp)
AGTGTCCCTCCAGTGATATTTTCAA
LOC_Os02g05450
Os.7330.1.S1_at--382--3051Chr02:2623759..2623783 (25 bp)
AATCTGCCGATTCCAATTGTTCAGG
LOC_Os02g05450
Os.7330.1.S1_at--667--7651Chr02:2623782..2623806 (25 bp)
GGGAGTCCACTTTATTCTCCAAATG
LOC_Os02g05450
Os.7330.1.S1_at--118--10231Chr02:2623811..2623835 (25 bp)
TATTCCAGACTTCATATCAGCAGAT
LOC_Os02g05450
Os.7330.1.S1_at--525--6871Chr02:2623900..2623924 (25 bp)
GTTTGGCTGAGATTCTTACCCACCA
LOC_Os02g05450
Target Sequence 
GGGCTGCAAACTGGCGTGTCATCAGAAATGTTTGGAGCCTCCTTTTGATAAAATTCTTCCAACTACCCGCCATGGGCGGC
TTTGCAAACACTGTTCTTCCAAGATGAAAATTTTAGACGCCATTAATGCCCATCTGGGGACAAGTTTTACAGTGAAGTGT
CCCTCCAGTGATATTTTCAAGGAAGCAGCTGAACATTTCAACTCTGATGATGGACTGGGCCAAGATTGGCTATCTGAGTA
TTCAGGTGATGAGGACTATGACCCTGAAGAAAATGAGGCCAGCAGCAGTGGTGAAGAGAATAAATCTGCCGATTCCAATT
GTTCAGGGAGTCCACTTTATTCTCCAAATGATGATATTCCAGACTTCATATCAGCAGATTTCAATGATGCTGAAGGATTC
TGTCGTGAAAGTTCAAATCTAGGAATCGATTTTGGTGAAGATGGTTTGGCTGAGATTCTTACCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis