Browse Element(s) Details


Os.7330.1.S2_at

Description gb:AK065257.1
DB_XREF= gi:32975275
TID=Os.7330.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.7330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J16, full insert sequence.
FL= gb:AK065257.1 gb:AK098855.1 gb:AK106225.1 gb:AK070502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0545011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7330.1.S2_at--893--2651Chr02:2625653..2625677 (25 bp)
AAGCCTTCCATCACAGATTCTAGTC
LOC_Os02g05450
Os.7330.1.S2_at--466--5991Chr02:2625707..2625731 (25 bp)
GAGACTGCTGTTTCTTGGGTGGACA
LOC_Os02g05450
Os.7330.1.S2_at--986--10811Chr02:2625721..2625745 (25 bp)
TTGGGTGGACACTTGGGCCTCTGAC
LOC_Os02g05450
Os.7330.1.S2_at--802--5791Chr02:2625743..2625767 (25 bp)
GACGCTCTGCATTTCTTGGACGTGA
LOC_Os02g05450
Os.7330.1.S2_at--937--8691Chr02:2625804..2625828 (25 bp)
TGTGCGGTCTCGAGAATCGGCTGCA
LOC_Os02g05450
Os.7330.1.S2_at--759--5971Chr02:2625839..2625863 (25 bp)
GAGAACATGCTATCATCGTCATCGT
LOC_Os02g05450
Os.7330.1.S2_at--22--2831Chr02:2625906..2625930 (25 bp)
AAGTTGTGCTTGTACCAGCTGCTGA
LOC_Os02g05450
Os.7330.1.S2_at--823--1531Chr02:2625943..2625967 (25 bp)
AGCATCTTAACCTTGCATCTGGGTC
LOC_Os02g05450
Os.7330.1.S2_at--987--7791Chr02:2625964..2625988 (25 bp)
GGTCCCAATGCTTTGCTTCAGTTGA
LOC_Os02g05450
Os.7330.1.S2_at--279--4911Chr02:2625978..2626002 (25 bp)
GCTTCAGTTGACCATTTGCTCATAG
LOC_Os02g05450
Os.7330.1.S2_at--502--10011Chr02:2626044..2626068 (25 bp)
TAGCTTGCCCCGTTTATCTTTGAAC
LOC_Os02g05450
Target Sequence 
AAGCCTTCCATCACAGATTCTAGTCAACTGATGAATAACAACATCGGCACTGAGGAGACTGCTGTTTCTTGGGTGGACAC
TTGGGCCTCTGACGCTCTGCATTTCTTGGACGTGAGCGATGATGAACATTTCTTCGATGTGATCGAGAAGGTGTGCGGTC
TCGAGAATCGGCTGCAGCGGTTGAAGGAGAACATGCTATCATCGTCATCGTCAACTGACAACAATGTGGCTGCTGAGAGT
GGCTTGCAAAACGAAGTTGTGCTTGTACCAGCTGCTGAGCTCAAGGATAAAGCATCTTAACCTTGCATCTGGGTCCCAAT
GCTTTGCTTCAGTTGACCATTTGCTCATAGGATTTTATACATCAGAAAATAGTACAGGAGGGGCTGGAGTGTAGCTTGCC
CCGTTTATCTTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7330.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis