Browse Element(s) Details


Os.7366.1.S1_at

Description gb:CA752624
DB_XREF= gi:25777874
DB_XREF=043
CLONE=43
TID=Os.7366.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7366 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47697 (A.thaliana) T47697 Regulator of chromosome condensation-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3827011/11Regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7366.1.S1_at--292--1051Chr05:22358186..22358210 (25 bp)
AGGTGTTTCGTGTGGAGCCCGACAC
LOC_Os05g38270
Os.7366.1.S1_at--302--8091Chr05:22358173..22358197 (25 bp)
GGAGCCCGACACAGTGCAGTCATAA
LOC_Os05g38270
Os.7366.1.S1_at--578--7671Chr05:22357927..22357948 (22 bp)
GGGTTGGAACAAGTACGGTCAGCTT
LOC_Os05g38270
Os.7366.1.S1_at--312--7111Chr05:22357829..22357851 (23 bp)
GTCAGCTTGGTTTGGGCGACTCAAC
LOC_Os05g38270
Os.7366.1.S1_at--877--5631Chr05:22357803..22357827 (25 bp)
GACAGAAACGTACCATGCCAAGTGC
LOC_Os05g38270
Os.7366.1.S1_at--421--4391Chr05:22357787..22357811 (25 bp)
GCCAAGTGCCCGTGGAAGCGTACAA
LOC_Os05g38270
Os.7366.1.S1_at--447--4011Chr05:22357770..22357794 (25 bp)
GCGTACAACCCGCTAAACGTTTCAT
LOC_Os05g38270
Os.7366.1.S1_at--861--9811Chr05:22357757..22357781 (25 bp)
TAAACGTTTCATGCGGTTGGTGGCA
LOC_Os05g38270
Os.7366.1.S1_at--1030--4571Chr05:22357614..22357638 (25 bp)
GCGCATACATGGCAGTGCTTGCAAT
LOC_Os05g38270
Os.7366.1.S1_at--300--1751Chr05:22357502..22357526 (25 bp)
ACCTCTGTAGACCTTGTTGAACGCT
LOC_Os05g38270
Os.7366.1.S1_at--1008--5271Chr05:22357472..22357496 (25 bp)
GAATGTATGATGCTCTGTTGTTGTA
LOC_Os05g38270
Target Sequence 
AGGTGTTTCGTGTGGAGCCCGACACAGTGCAGTCATAACAGATAAAGGAGATGTCTTCTGCTGGGGTTGGAACAAGTACG
GTCAGCTTGGTTTGGGCGACTCAACAGACAGAAACGTACCATGCCAAGTGCCCGTGGAAGCGTACAACCCGCTAAACGTT
TCATGCGGTTGGTGGCACACGTTGGTTCTCGNGGAATATCCTACCTGATGAAAGATTGAAGATGCATGCTTTCGGTTNTC
CTAGGAATTTGGTAGGTTTGAGGTCTGTNTGTCCATGCTGCCCGACTGCCCCAATGCGCATACATGGCAGTGCTTGCAAT
ATCATTCTTTTCATTGTCTTTTTACAATGCAATGTAAACAAGNTTGTGTNNNNNNNNTGCTGTGCATATGCAAAGAGTAG
CAACTAGAAGTAATAACCTCTGTAGACCTTGTTGAACGCTAGGGTGAATGTATGATGCTCTGTTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis