Browse Element(s) Details


Os.7368.1.S1_at

Description gb:AK059694.1
DB_XREF= gi:32969712
TID=Os.7368.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B10, full insert sequence.
FL= gb:AK059694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4231411/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7368.1.S1_at--673--2511Chr02:25446427..25446451 (25 bp)
AACTTGCATTCTCTATTCCTGAGCA
LOC_Os02g42314
Os.7368.1.S1_at--36--5831Chr02:25446369..25446393 (25 bp)
GACCAAAATTTTCCACCCGAATGTG
LOC_Os02g42314
Os.7368.1.S1_at--74--7531Chr02:25445996..25446020 (25 bp)
GTGGAGCCCAGCATGGACACTACAA
LOC_Os02g42314
Os.7368.1.S1_at--403--3571Chr02:25445957..25445981 (25 bp)
CATAATTGCATTGATGGCCCATCCT
LOC_Os02g42314
Os.7368.1.S1_at--603--7231Chr02:25445925..25445946 (22 bp)
GTCCACTTAACTGTGACTCAGGCAA
LOC_Os02g42314
Os.7368.1.S1_at--767--9651Chr02:25444726..25444750 (25 bp)
TCAGAGGCTATCAATCCATGGCAAG
LOC_Os02g42314
Os.7368.1.S1_at--313--751Chr02:25444700..25444724 (25 bp)
ATGTATACTAGGTTGGCTGCCATGC
LOC_Os02g42314
Os.7368.1.S1_at--969--8331Chr02:25444621..25444645 (25 bp)
GGCTGATTCATGTGATTTGCTCTGT
LOC_Os02g42314
Os.7368.1.S1_at--766--7051Chr02:25444591..25444615 (25 bp)
GTAACTCTTACTGTCACCATGTGAA
LOC_Os02g42314
Os.7368.1.S1_at--815--9891Chr02:25444559..25444583 (25 bp)
TACTTATTTTCTTACCTCACTCTTA
LOC_Os02g42314
Os.7368.1.S1_at--625--2511Chr02:25444461..25444485 (25 bp)
AACTGGGTTCGGTACTTCTAATGCA
LOC_Os02g42314
Target Sequence 
AACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAAT
GTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTG
TAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAG
GCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGT
GCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCA
TGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTG
TAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis