Browse Element(s) Details


Os.7391.1.S1_x_at

Description gb:CR285548
DB_XREF= gi:44672114
DB_XREF=CR285548
CLONE=p801a11p3
TID=Os.7391.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7391 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_171716.1 (A.thaliana) Mago Nashi-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0166011/11Mago nashi protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007530biological_processsex determination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7391.1.S1_x_at--144--6231Chr08:378016..378040 (25 bp)
GAGGCCACCAGGATCATCCACGAAT
LOC_Os08g01660
Os.7391.1.S1_x_at--291--1731Chr08:378022..378045 (24 bp)
ACCAGGATCATCCACGAATCCGAGA
LOC_Os08g01660
Os.7391.1.S1_x_at--866--3471Chr08:378024..378045 (22 bp)
CAGGATCATCCACGAATCCGAGATT
LOC_Os08g01660
Os.7391.1.S1_x_at--532--6311Chr08:378154..378178 (25 bp)
GATGACAGCAACTGGCCGGAGCCAG
LOC_Os08g01660
Os.7391.1.S1_x_at--1137--3991Chr08:378207..378231 (25 bp)
CGTGATGGGGAACGAGCACATCTCC
LOC_Os08g01660
Os.7391.1.S1_x_at--898--7031Chr08:381725..381749 (25 bp)
GTACAATGTATGATCTGATCCAGTG
LOC_Os08g01660
Os.7391.1.S1_x_at--680--711Chr08:381734..381758 (25 bp)
ATGATCTGATCCAGTGAGTTAACCC
LOC_Os08g01660
Os.7391.1.S1_x_at--652--3651Chr08:381765..381789 (25 bp)
CTTTTGGGTGGTTTGTGGACATTGA
LOC_Os08g01660
Os.7391.1.S1_x_at--1143--8651Chr08:381778..381802 (25 bp)
TGTGGACATTGAGGGTGGAAATCTT
LOC_Os08g01660
Os.7391.1.S1_x_at--130--10631Chr08:381786..381810 (25 bp)
TTGAGGGTGGAAATCTTCAGACTCT
LOC_Os08g01660
Os.7391.1.S1_x_at--804--9651Chr08:381802..381826 (25 bp)
TCAGACTCTGTTGCCTGGGATTGTT
LOC_Os08g01660
Target Sequence 
GAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGACCNNCGTGGGAA
GGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAG
ACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTNAAGTGCTTCGTGTTTTCACTCATCAA
TCTCCACTTCAAGATCAAGCCCATTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTNTGGTCAGTGTTAGAGAGCT
CNGTACAATGTATGATCTGATCCAGTGAGTTAACCCNTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCT
TCAGACTCTGTTGCCTGGGATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7391.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis