Browse Element(s) Details


Os.7393.1.S1_at

Description gb:AK073121.1
DB_XREF= gi:32983144
TID=Os.7393.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU197337(E30403)~similar to blue copper-binding protein (OJ1118_G09.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033012A01, full insert sequence.
FL= gb:AK073121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0220011/11Plastocyanin-like domain containing protein, expressed
LOC_Os10g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g381201/11homeodomain protein JUBEL2, putative, expressed
LOC_Os11g379801/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0010154biological_processfruit development
GO:0016051biological_processcarbohydrate biosynthesis
GO:0031225cellular_componentanchored to membrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
GO:0005515molecular_functionprotein binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7393.1.S1_at--194--6151Chr07:698691..698715 (25 bp)
GAGGTCGGGTACGACAACTGCGACA
LOC_Os07g02200
Os.7393.1.S1_at--403--7851Chr07:698684..698708 (25 bp)
GGTACGACAACTGCGACAAGGCGAA
LOC_Os07g02200
Os.7393.1.S1_at--216--2951Chr07:698667..698691 (25 bp)
AAGGCGAACGCCATTAGCAGCTACA
LOC_Os07g02200
Os.7393.1.S1_at--76--9951Chr07:698628..698652 (25 bp)
TACGCGTTCCAGCTCAAGGAGGCCA
LOC_Os07g02200
Os.7393.1.S1_at--1156--1531Chr07:698583..698607 (25 bp)
AGCTATGGCTACTGCTACAAAGGCA
LOC_Os07g02200
Os.7393.1.S1_at--967--9911Chr07:698574..698598 (25 bp)
TACTGCTACAAAGGCATGAAGCTCG
LOC_Os07g02200
Os.7393.1.S1_at--733--10672Chr05:22272392..22272518 (25 bp)
TTCCTCAGGATGCTCTGATTCTGAT
LOC_Os05g38120
Os.7393.1.S1_at--546--632Chr11:22016499..22016524 (24 bp)
ATGCTCTGATTCTGATCTGATCTGA
LOC_Os11g37980
Os.7393.1.S1_at--12--9251Chr07:698335..698359 (25 bp)
TCCTTTCTTGCTCGGTTTGTAATTT
LOC_Os07g02200
Os.7393.1.S1_at--959--7411Chr07:698217..698241 (25 bp)
GTGTTGCAAAGATCTACCATTAGGT
LOC_Os07g02200
Os.7393.1.S1_at--718--9972Chr10:1358372..1358614 (25 bp)
TACCATTAGGTAGCAAGTGTGAATT
LOC_Os10g03250
Target Sequence 
GAGGTCGGGTACGACAACTGCGACAAGGCGAACGCCATTAGCAGCTACAGCAAGGGGCACAGCTACGCGTTCCAGCTCAA
GGAGGCCAAGGACTACTACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAAGG
GCTCCGCATCTTCTTCCTCCTCNGGCTCCGGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAG
TCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCT
CTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAATTTGTAAGTTCATTTGTTCTTG
ATTTCTCTAGCATTNTCCGGCCGGTTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTG
CAAAGATCTACCATTAGGTAGCAAGTGTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis