Browse Element(s) Details


Os.7405.1.S1_at

Description gb:AK100427.1
DB_XREF= gi:32985636
TID=Os.7405.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088D05, full insert sequence.
FL= gb:AK100427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3123011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31210NANA3+17729241..17731146UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7405.1.S1_at--742--2871Chr03:17738449..17738473 (25 bp)
AAGTGGATGGCCTTGGCGTTTGCCA
LOC_Os03g31230
Os.7405.1.S1_at--447--6851Chr03:17738466..17738490 (25 bp)
GTTTGCCAAATTTCGAACGCCGAGA
LOC_Os03g31230
Os.7405.1.S1_at--422--10591Chr03:17738566..17738590 (25 bp)
TTCTGCATTGAGAACAGCTGCCTTG
LOC_Os03g31230
Os.7405.1.S1_at--526--1591Chr03:17738581..17738605 (25 bp)
AGCTGCCTTGCCTTGGGAAGTCTGT
LOC_Os03g31230
Os.7405.1.S1_at--168--5331Chr03:17738597..17738621 (25 bp)
GAAGTCTGTTCCTCAAAATCCTCCA
LOC_Os03g31230
Os.7405.1.S1_at--1150--2751Chr03:17738658..17738682 (25 bp)
AAGACTCGACGGGAGCGATCTGTAT
LOC_Os03g31230
Os.7405.1.S1_at--216--6411Chr03:17738674..17738698 (25 bp)
GATCTGTATAGTGGTCAAGTAGCTC
LOC_Os03g31230
Os.7405.1.S1_at--219--4811Chr03:17738800..17738824 (25 bp)
GCTCGTATGTGTACAACCTATTGCA
LOC_Os03g31230
Os.7405.1.S1_at--269--4611Chr03:17738838..17738862 (25 bp)
GTTGGAGAGCTTCTAGTTAACCCTT
LOC_Os03g31230
Os.7405.1.S1_at--465--2971Chr03:17738874..17738898 (25 bp)
AATGTCGTACTCATATAGTTGTATC
LOC_Os03g31230
Os.7405.1.S1_at--949--6871Chr03:17738894..17738918 (25 bp)
GTATCAATTCTGACCTAAGGCATTT
LOC_Os03g31230
Target Sequence 
AAGTGGATGGCCTTGGCGTTTGCCAAATTTCGAACGCCGAGATGGTTTTGATCTTTGCTGAAGTTTTGAAATTTGAGGGG
ACTGCACAGCCAAAAAANGTTAAAGACCAAGTCAAGAGTTCTGCATTGAGAACAGCTGCCTTGCCTTGGGAAGTCTGTTC
CTCAAAATCCTCCAACCTGTCGTCTGTCTTGGTGATGNTATGGTCGCCAGAAGACTCGACGGGAGCGATCTGTATAGTGG
TCAAGTAGCTCAGTATTTTTCAAAGCCATTTTGTAAAGTAGCATTTGGGGACCAAACTGAGCTTTTGTGCGACGTCGTCT
TATATTCATTCATTGTGTACTCNNGTCATCTTTTGCTCGTATGTGTACAACCTATTGCATTNTGTAGTTGGAGTTGGAGA
GCTTCTAGTTAACCCTTNNNNTNNNTGCAGAAAATGTCGTACTCATATAGTTGTATCAATTCTGACCTAAGGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis