Browse Element(s) Details

Os.7428.1.S1_at

Description

gb:AK121090.1
DB_XREF= gi:37990713
TID=Os.7428.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066C23, full insert sequence.
FL= gb:AK121090.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g44470	11/11	Pollen allergen family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g44430	OsAffx.5104.1.S1_at	11/11	6	+	26832863..26835087	Protein kinase domain containing protein
LOC_Os06g44440	NA	NA	6	+	26837208..26838169	hypothetical protein
LOC_Os06g44450	Os.7920.1.S1_at	11/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44450	OsAffx.8265.1.A1_x_at	1/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44460	Os.24909.1.A1_s_at	11/11	6	+	26853891..26857581	D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os06g44470	Os.7428.1.S1_at	11/11	6	+	26858074..26858738	Pollen allergen family protein, expressed
LOC_Os06g44480	OsAffx.22940.2.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.1.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.3.S1_x_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.18.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.2.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.3.S1_x_at	7/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.31552.2.S1_at	1/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44490	NA	NA	6	+	26870786..26871034	hypothetical protein
LOC_Os06g44500	Os.52803.1.S1_at	11/11	6	+	26875998..26877988	Kelch motif family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7428.1.S1_at--699--563	1	Chr06:26858603..26858627 (25 bp)	GACACTGTTTGTCGTTGGCTCATAC	LOC_Os06g44470
Os.7428.1.S1_at--876--439	1	Chr06:26858578..26858602 (25 bp)	GCCACCGAGCTTACCTTCAAGGTTA	LOC_Os06g44470
Os.7428.1.S1_at--618--165	1	Chr06:26858542..26858566 (25 bp)	AGCGCAACTAGCCTGGAACTCATCA	LOC_Os06g44470
Os.7428.1.S1_at--96--531	1	Chr06:26858456..26858480 (25 bp)	GAAGGAATCATCGTCTAACACCTGG	LOC_Os06g44470
Os.7428.1.S1_at--503--853	1	Chr06:26858434..26858458 (25 bp)	TGGACGATCAAAAGCGGCTCGCCAC	LOC_Os06g44470
Os.7428.1.S1_at--290--751	1	Chr06:26858307..26858331 (25 bp)	GTGGTATCCAGCTCTAAGTAACATA	LOC_Os06g44470
Os.7428.1.S1_at--812--721	1	Chr06:26858259..26858283 (25 bp)	GTCGCATGAGAATTTTTAGCCTCTA	LOC_Os06g44470
Os.7428.1.S1_at--419--1019	1	Chr06:26858226..26858250 (25 bp)	TATTTTAAGACAGATTGGGCCGCCT	LOC_Os06g44470
Os.7428.1.S1_at--243--757	1	Chr06:26858210..26858234 (25 bp)	GGGCCGCCTGCGAGCGAGCCAAAAA	LOC_Os06g44470
Os.7428.1.S1_at--236--1039	1	Chr06:26858181..26858205 (25 bp)	TTTTCTGTTGTCATTTCATCGGTAA	LOC_Os06g44470
Os.7428.1.S1_at--794--229	1	Chr06:26858143..26858167 (25 bp)	AAATGGATCTGTTTGTCCTTTGTTT	LOC_Os06g44470

Target Sequence

GACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAAC
TCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCG
TCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTA
CCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACAT
ACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGC
CTGCGAGCGAGCCAAAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCT
TTGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis