Browse Element(s) Details


Os.7449.2.S1_x_at

Description gb:NM_186509.1
DB_XREF= gi:34900103
GEN=OJ1116_C08.17
TID=Os.7449.2
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7449 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) allergen RA16 (OJ1116_C08.17), mRNA.
PROD=allergen RA16
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1141011/11Seed allergenic protein RA5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein
LOC_Os07g11380Os.5529.4.S1_x_at11/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.5.S1_x_at10/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.4.S1_s_at8/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.39040.3.S1_x_at2/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390OsAffx.22461.2.S1_x_at7/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390OsAffx.22461.3.S1_x_at6/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11400NANA7+6266830..6272708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11410Os.7449.2.S1_x_at11/117+6274377..6275121Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11420NANA7+6281884..6285344transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11430Os.47463.1.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11430Os.14491.2.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11440Os.57449.1.S1_x_at1/117+6292915..6294607Chalcone synthase, putative, expressed
LOC_Os07g11450OsAffx.22460.1.S1_at10/117+6298846..6300472retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7449.2.S1_x_at--704--851Chr07:6274980..6275004 (25 bp)
ATGGCTTCCAACAAGGTAGTGATCT
LOC_Os07g11410
Os.7449.2.S1_x_at--755--9211Chr07:6274974..6274998 (25 bp)
TCCAACAAGGTAGTGATCTCGGCGT
LOC_Os07g11410
Os.7449.2.S1_x_at--292--7211Chr07:6274938..6274962 (25 bp)
GTCGTCTCCGTGCTCGCAGCAACGA
LOC_Os07g11410
Os.7449.2.S1_x_at--743--7311Chr07:6274929..6274953 (25 bp)
GTGCTCGCAGCAACGACGACAATGG
LOC_Os07g11410
Os.7449.2.S1_x_at--683--3411Chr07:6274922..6274946 (25 bp)
CAGCAACGACGACAATGGCGGACCA
LOC_Os07g11410
Os.7449.2.S1_x_at--790--2951Chr07:6274909..6274933 (25 bp)
AATGGCGGACCACCACCAAGAACAG
LOC_Os07g11410
Os.7449.2.S1_x_at--680--2751Chr07:6274892..6274916 (25 bp)
AAGAACAGGTGGTCTACACTCCCGG
LOC_Os07g11410
Os.7449.2.S1_x_at--589--1051Chr07:6274886..6274910 (25 bp)
AGGTGGTCTACACTCCCGGCCAGCT
LOC_Os07g11410
Os.7449.2.S1_x_at--1067--4251Chr07:6274871..6274895 (25 bp)
CCGGCCAGCTATGTCAGCCAGGAAT
LOC_Os07g11410
Os.7449.2.S1_x_at--163--1571Chr07:6274865..6274889 (25 bp)
AGCTATGTCAGCCAGGAATCGGCTA
LOC_Os07g11410
Os.7449.2.S1_x_at--133--7771Chr07:6274718..6274742 (25 bp)
GGTGCAGGTGCGATGCGCTCAACCA
LOC_Os07g11410
Target Sequence 
ATGGCTTCCAACAAGGTAGTGATCTCGGCGTTGCTCGTCGTCGTCGTCTCCGTGCTCGCAGCAACGACGACAATGGCGGA
CCACCACCAAGAACAGGTGGTCTACACTCCCGGCCAGCTATGTCAGCCAGGAATCGGCTACCCGACGTACCCGCTGCCGC
GATGCCGGGCGTTCGTGAAGCGCCAGTGCGTCGCCCCCGGNACGGTGGACGAGCAGGTCCGGCGAGGCTGCTGCNGNCAG
NTCGCCGCNCATCGACAGCAGCTGGTGCAGGTGCGATGCGCTCAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7449.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis