Browse Element(s) Details


Os.7461.1.S1_at

Description gb:AK066549.1
DB_XREF= gi:32976567
TID=Os.7461.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070F02, full insert sequence.
FL= gb:AK066549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7461.1.S1_at--318--271Chr02:35225441..35225612 (25 bp)
ATAGGATTCCGTGGACACAGACCGC
LOC_Os02g57500
Os.7461.1.S1_at--933--1811Chr02:35225396..35225420 (25 bp)
ACGCCTACGACAACATGAACCGGTT
LOC_Os02g57500
Os.7461.1.S1_at--16--8991Chr02:35225381..35225405 (25 bp)
TGAACCGGTTCACGACGCAGCAGAG
LOC_Os02g57500
Os.7461.1.S1_at--873--1331Chr02:35225360..35225384 (25 bp)
AGAGGGACGCCATCACGAAGCTGTG
LOC_Os02g57500
Os.7461.1.S1_at--556--8871Chr02:35225275..35225299 (25 bp)
TGATGTCAACGCGTTCGAGTACCTC
LOC_Os02g57500
Os.7461.1.S1_at--1051--1951Chr02:35225182..35225206 (25 bp)
CACTCAGTGGCTCGGCTAAAACTAC
LOC_Os02g57500
Os.7461.1.S1_at--385--2911Chr02:35225152..35225176 (25 bp)
AAGGTTGCTGTCTGCTGATGTACAC
LOC_Os02g57500
Os.7461.1.S1_at--441--8751Chr02:35225134..35225158 (25 bp)
TGTACACTGGTGTGAGGTCGCTCAG
LOC_Os02g57500
Os.7461.1.S1_at--432--6291Chr02:35225087..35225111 (25 bp)
GATGATTATTCCACAACGACGGCAT
LOC_Os02g57500
Os.7461.1.S1_at--612--6991Chr02:35224920..35224944 (25 bp)
GTACGTTGTCATTGATGGATCTCCA
LOC_Os02g57500
Os.7461.1.S1_at--34--7411Chr02:35224890..35224914 (25 bp)
GTGATCTCACCTATCTTGTAAACTT
LOC_Os02g57500
Target Sequence 
ATAGGATTCCGTGGACACAGACCGCCATTGACATCTTTGCGAAGCACGCCTACGACAACATGAACCGGTTCACGACGCAG
CAGAGGGACGCCATCACGAAGCTGTGGAACTCGATCAAGGAGCAGCAGATCAGGCGGAAGCAGGGCAAGTCGGTGAGCGG
GAAGCTTGATGTCAACGCGTTCGAGTACCTCCAGGAGAAGTACTCCCATGAGAAGATCAGCATCCGCCATGCTGTAGGCG
GTGGCGGTGAACGGCGCGCCACTCAGTGGCTCGGCTAAAACTACGAGGTAAGGTTGCTGTCTGCTGATGTACACTGGTGT
GAGGTCGCTCAGCGGAAGAAACTGCAAGAAACTCGATGATTATTCCACAACGACGGCATTCATTTTGAGATGTTGTGTAC
ATCAGCATGGGTTGTGAGTATGTGACATATACGGATGATGCAATTGCTTGGAATTTTGATGGCAAGAATGCGATTTATAC
TTTGATGATATAGCTGGGCAGCTGGCTGGCTATGTACATGGGTACGTTGTCATTGATGGATCTCCATTCTTGTGATCTCA
CCTATCTTGTAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis