Browse Element(s) Details


Os.7495.1.S1_at

Description gb:AK120183.1
DB_XREF= gi:37989806
TID=Os.7495.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034D10, full insert sequence.
FL= gb:AK120183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0123011/11DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein
LOC_Os03g01250Os.24715.2.A1_a_at11/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01250Os.24715.3.S1_x_at8/113+148216..1534622-phosphoglycerate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7495.1.S1_at--978--1351Chr03:126870..126894 (25 bp)
AGAGCAAGTGCGTGTATCGGAACGA
LOC_Os03g01230
Os.7495.1.S1_at--923--2191Chr03:126965..126989 (25 bp)
ACAAAGACGGTGAGGTGCGCCGCCT
LOC_Os03g01230
Os.7495.1.S1_at--394--3831Chr03:127075..127099 (25 bp)
CTGCGCCCACCGATGGAGGGAATGA
LOC_Os03g01230
Os.7495.1.S1_at--1012--2992Chr03:127095..127119 (25 bp)
AATGATTTTACTTCTTTCTCTTCTT
LOC_Os03g01230
Os.7495.1.S1_at--519--9571Chr03:127116..127140 (25 bp)
TCTTCTCCACAACTACAACTTGATC
LOC_Os03g01230
Os.7495.1.S1_at--1048--691Chr03:127145..127169 (25 bp)
ATGATGATCAACTTTCCCGGTTTGC
LOC_Os03g01230
Os.7495.1.S1_at--662--271Chr03:127219..127243 (25 bp)
ATAGGTAGGGTTCTCTGCCTTCATC
LOC_Os03g01230
Os.7495.1.S1_at--1083--491Chr03:127241..127265 (25 bp)
ATCGGGCTCATGTTTTATCTACTTG
LOC_Os03g01230
Os.7495.1.S1_at--794--9571Chr03:127266..127290 (25 bp)
TCTTGTTTAACTCGTACTCCTTCGA
LOC_Os03g01230
Os.7495.1.S1_at--381--4031Chr03:127278..127302 (25 bp)
CGTACTCCTTCGATGCTAGATCAAT
LOC_Os03g01230
Os.7495.1.S1_at--582--251Chr03:127364..127388 (25 bp)
ATATCTTTAACATCGCTGTCATCCT
LOC_Os03g01230
Target Sequence 
AGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTNGCTGCAGGACGTGGCGTCGGA
CCCGACACTNGCCGCGCACAAAGACGGTGAGGTGCGCCGCCTNGCGGGCACGGCGAGGCCGTCTTCTTNCCANGGCCACC
GCCCGCGGCGAGGAGGGCATGACCCTNTTCTTCGTCTGCTGCAACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTA
CTTCTTTCTCTTCTTCTCCACAACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATT
GAGTACTAGTTTGTAAATGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTATCTACTT
GTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTAACTTGGGATGCTAATTGTTGAATCAGCAGACGATACAT
GGATGTTCAATNCACNAAATATATCTTTAACATCGCTGTCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis