Browse Element(s) Details


Os.7527.1.S1_at

Description gb:AK067320.1
DB_XREF= gi:32977338
TID=Os.7527.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.25 (P0672D08.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106P10, full insert sequence.
FL= gb:AK067320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0128011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01240OsAffx.22947.1.S1_x_at11/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.3.S1_x_at5/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.2.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.5.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01250NANA1+114883..117473transposon protein, putative, unclassified
LOC_Os01g01260NANA1+118104..124259transposon protein, putative, unclassified
LOC_Os01g01270OsAffx.20387.1.S1_x_at2/111+125699..130361retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01280Os.7527.1.S1_at11/111+131102..132244expressed protein
LOC_Os01g01290Os.48026.1.A1_at11/111+136952..138353Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g01295Os.13236.1.S1_at11/111+138761..141356expressed protein
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7527.1.S1_at--77--931Chr01:131724..131748 (25 bp)
AGGCTATCCTCAAGACGCAGAGGAA
LOC_Os01g01280
Os.7527.1.S1_at--394--4031Chr01:131883..131907 (25 bp)
CGTACCGATGCGTCGCCACCAAGGT
LOC_Os01g01280
Os.7527.1.S1_at--613--9451Chr01:131937..131961 (25 bp)
TCGGCGATTCAAGAGGGCAGAGCCA
LOC_Os01g01280
Os.7527.1.S1_at--1118--1971Chr01:132036..132060 (25 bp)
ACTCTATCCTCGACTATTAACCAAG
LOC_Os01g01280
Os.7527.1.S1_at--46--9371Chr01:132045..132069 (25 bp)
TCGACTATTAACCAAGGCCATACAT
LOC_Os01g01280
Os.7527.1.S1_at--407--8431Chr01:132060..132084 (25 bp)
GGCCATACATATGCTTGCTTCATTA
LOC_Os01g01280
Os.7527.1.S1_at--192--4931Chr01:132072..132096 (25 bp)
GCTTGCTTCATTATCTCTAGTCTGT
LOC_Os01g01280
Os.7527.1.S1_at--484--3591Chr01:132080..132104 (25 bp)
CATTATCTCTAGTCTGTACAAGTAC
LOC_Os01g01280
Os.7527.1.S1_at--199--3871Chr01:132093..132117 (25 bp)
CTGTACAAGTACAACTCGTCCAAAT
LOC_Os01g01280
Os.7527.1.S1_at--79--2551Chr01:132105..132129 (25 bp)
AACTCGTCCAAATTCATTCATCCAT
LOC_Os01g01280
Os.7527.1.S1_at--619--3531Chr01:132135..132159 (25 bp)
CATCCACGACACATATACAAATACT
LOC_Os01g01280
Target Sequence 
AGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGANGAGGAGACGGCGTACGGGCANTACATCNAGGCGGAG
GTCGACGGCGGCGCAGGCCGCGANGTGATGGAGTTCNTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGC
GTACCGATGCGTCGCCACCAAGGTNATNTTCGNCTACCCCTTCACCACTGCNGTCGGCGATTCAAGAGGGCAGAGCCAGA
GGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCNGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATC
CTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTC
ATCCATCCATCCATCCACGACACATATACAAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis