Browse Element(s) Details


Os.7531.1.S1_at

Description gb:AK066202.1
DB_XREF= gi:32976220
TID=Os.7531.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056K06, full insert sequence.
FL= gb:AK066202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4626010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein
LOC_Os03g46250OsAffx.25575.1.S1_at11/113+26101813..26102757acetyltransferase, GNAT family protein, expressed
LOC_Os03g46260Os.7531.1.S1_at10/113+26106267..26109634expressed protein
LOC_Os03g46270Os.46314.3.S1_at2/113+26124655..26128916transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46280OsAffx.23366.2.S1_s_at1/113+26130797..26134394transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7531.1.S1_at--984--1971Chr03:26108359..26108383 (25 bp)
ACTGCATCGTCGAGAGCTGCGGCGA
LOC_Os03g46260
Os.7531.1.S1_at--591--4091Chr03:26108289..26108313 (25 bp)
CGACGCGGTGCGAACCAATGGGTTC
LOC_Os03g46260
Os.7531.1.S1_at--857--3191Chr03:26108274..26108298 (25 bp)
CAATGGGTTCCTGAACTCTTGCTAC
LOC_Os03g46260
Os.7531.1.S1_at--1017--671NONE
ATGACATCTTCATCTACCGAGGTGA
NONE
Os.7531.1.S1_at--646--7791Chr03:26106671..26106695 (25 bp)
GGTACCAGGAGATGCTTTTCGACGA
LOC_Os03g46260
Os.7531.1.S1_at--181--5611Chr03:26106639..26106663 (25 bp)
GACAATTTGCGCTAGGCTGTTGAAC
LOC_Os03g46260
Os.7531.1.S1_at--232--7811Chr03:26106609..26106633 (25 bp)
GGTCGTTCCACATGAGTATTTCTAT
LOC_Os03g46260
Os.7531.1.S1_at--818--10351Chr03:26106521..26106545 (25 bp)
TTTTTGTTTTCTCCACTTTTGCGAG
LOC_Os03g46260
Os.7531.1.S1_at--1101--11Chr03:26106496..26106520 (25 bp)
ATTGGATGCTGTTTTTGGCCATGGA
LOC_Os03g46260
Os.7531.1.S1_at--307--1031Chr03:26106433..26106457 (25 bp)
AGACCTTTGCCCACTTTTGTAAGAT
LOC_Os03g46260
Os.7531.1.S1_at--1083--7351Chr03:26106374..26106398 (25 bp)
GTGACTTTCGAGTTAGTTGCAATCT
LOC_Os03g46260
Target Sequence 
ACTGCATCGTCGAGAGCTGCGGCGATGTGCTCGTGGAGAAGGTGGCCGGCGGCGGCGGCGACGGCGACGGCGACGCGGTG
CGAACCAATGGGTTCCTGAACTCTTGCTACNGCATGCAACNAAGCAGCTTGGACNATGGCAATGACATCTTCATCTACCG
AGGTGATAAAGCATTCTGCAGCAGTGAGTNCCGGTACCAGGAGATGCTTTTCGACGAGGCGGTGGACAATTTGCGCTAGG
CTGTTGAACGAAATGGTCGTTCCACATGAGTATTTCTATGGAGGAGGAAGAAGACNAATAGTCCTAAATAACTGAGATGA
GATTTGTTTTCTTTCTTTTTTTGTTTTTGTTTTCTCCACTTTTGCGAGATTGGATGCTGTTTTTGGCCATGGAGAAGGGG
GAATGATTTATTANTCTTTTTTGCGGATTAAAGACCTTTGCCCACTTTTGTAAGATGTTGATTATTGATTGCTTGGGGCA
TCATGTTTTTGTGACTTTCGAGTTAGTTGCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis