Browse Element(s) Details


Os.7558.1.S1_s_at

Description gb:AK109500.1
DB_XREF= gi:32994709
TID=Os.7558.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F05, full insert sequence.
FL= gb:AK109500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4915011/11Yippee, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49110OsAffx.21249.1.S1_at1/113+27921890..27923629hypothetical protein
LOC_Os03g49120Os.14919.1.S1_at6/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49120Os.56216.1.S1_at2/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49126OsAffx.3690.1.S1_at11/113+27933023..27935849expressed protein
LOC_Os03g49132OsAffx.25636.1.S1_at11/113+27936611..27938041hypothetical protein
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7558.1.S1_s_at--1005--1131Chr03:27947533..27947557 (25 bp)
AGTCCTTCCATTGCAAGCACGGGAA
LOC_Os03g49150
Os.7558.1.S1_s_at--251--8191Chr03:27947554..27947578 (25 bp)
GGAAGGCGTACCTCTTCAATAAGGT
LOC_Os03g49150
Os.7558.1.S1_s_at--111--6471Chr03:27949824..27949848 (25 bp)
GATAACCGGAATGCATACTGTGTCT
LOC_Os03g49150
Os.7558.1.S1_s_at--507--251Chr03:27949850..27949874 (25 bp)
ATATCTTCTGTGTTGGCTGCGGATC
LOC_Os03g49150
Os.7558.1.S1_s_at--957--5071Chr03:27950190..27950214 (25 bp)
GCAGCCACTACTTTGTTACACATGA
LOC_Os03g49150
Os.7558.1.S1_s_at--23--3751Chr03:27950268..27950292 (25 bp)
CTCAAGCCTTATCCATGTAATCCAT
LOC_Os03g49150
Os.7558.1.S1_s_at--589--9651Chr03:27950345..27950369 (25 bp)
TCAGAGCAACCCCAGCGTAATTGTT
LOC_Os03g49150
Os.7558.1.S1_s_at--872--251Chr03:27950385..27950409 (25 bp)
ATATCCTATCATCTTCCTTCAGGAG
LOC_Os03g49150
Os.7558.1.S1_s_at--503--8631Chr03:27950423..27950447 (25 bp)
TGGGTGTTACCGTCTGTATATGCAT
LOC_Os03g49150
Os.7558.1.S1_s_at--154--2651Chr03:27950450..27950474 (25 bp)
AACCAGTGATGCCTGTAGTAGCCCC
LOC_Os03g49150
Os.7558.1.S1_s_at--806--8511Chr03:27950494..27950518 (25 bp)
TGGAATGTATCTCAGGCCCTAATGA
LOC_Os03g49150
Target Sequence 
AGTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTTGTCAATGTGACTTCTGGAGTAAAAGAGGATCGC
ATGATGATAACCGGAATGCATACTGTGTCTNGATATCTTCTGTGTTGGCTGCGGATCCATTGTTGGATGGAAATATGAAG
CTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAATTTATTTTAGAGAGGTATAAGGTGTCTGGTCCTGATGGCAGC
CACTACTTTGTTACACATGATGCTCATGTTGGGGGAAGCGACGTGGACGACGTATGAAGCACAACTCGACATGCTCAAGC
CTTATCCATGTAATCCATGTAAATAACCCAAGTGTTTGTTGGTCTTAGTTACCCGGGGATTTGCTTCCATTCAGAGCAAC
CCCAGCGTAATTGTTGTCCTAGATGACCTAATATCCTATCATCTTCCTTCAGGAGTTCAGGTTATTATTGGGTGTTACCG
TCTGTATATGCATGTAACCAGTGATGCCTGTAGTAGCCCCCTAAAAGCTGTTGTAATCCTGGAATGTATCTCAGGCCCTA
ATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7558.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis