Browse Element(s) Details


Os.7561.1.S1_at

Description gb:AK105238.1
DB_XREF= gi:32990447
TID=Os.7561.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B02, full insert sequence.
FL= gb:AK105238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0918011/11CUE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7561.1.S1_at--208--1431Chr02:4720133..4720157 (25 bp)
AGAACAATTCTATGCCTGGGCGTTT
LOC_Os02g09180
Os.7561.1.S1_at--165--6851Chr02:4720154..4720178 (25 bp)
GTTTCCCTCCTGATGTCTTTTAACA
LOC_Os02g09180
Os.7561.1.S1_at--1027--5191Chr02:4720189..4720213 (25 bp)
GCAATATTCCCTCTCATAGTCTTAT
LOC_Os02g09180
Os.7561.1.S1_at--829--5831Chr02:4720252..4720276 (25 bp)
GACCTATTGCTCATGGTGTGGTTAG
LOC_Os02g09180
Os.7561.1.S1_at--277--1411Chr02:4720275..4720299 (25 bp)
AGACACTTAGACTATTCACCCTTAC
LOC_Os02g09180
Os.7561.1.S1_at--464--10511Chr02:4720289..4720313 (25 bp)
TTCACCCTTACGTCCAAATCATAAA
LOC_Os02g09180
Os.7561.1.S1_at--513--931Chr02:4720390..4720414 (25 bp)
AGGAAGCTTGAGTGCTTGACCCTTC
LOC_Os02g09180
Os.7561.1.S1_at--170--4191Chr02:4720409..4720433 (25 bp)
CCCTTCTCTCAGACCATTGATTGTA
LOC_Os02g09180
Os.7561.1.S1_at--1048--951Chr02:4720481..4720505 (25 bp)
AGGACCTGTTCACTGTATTGTAGTA
LOC_Os02g09180
Os.7561.1.S1_at--476--6171Chr02:4720535..4720559 (25 bp)
GAGGATCTGTTCATTGTATCGTACG
LOC_Os02g09180
Os.7561.1.S1_at--412--6911Chr02:4720550..4720574 (25 bp)
GTATCGTACGTATCCACTGATATAT
LOC_Os02g09180
Target Sequence 
AGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTA
TACTCAATCATACCAAGATATCATATGATGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCA
CCCTTACGTCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCATCAATTGAGGTGT
AGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATG
TATTGTAGCATGTAATTCAAAGTATGAAAGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCAT
GAGAGGATCTGTTCATTGTATCGTACGTATCCACTGATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis