Browse Element(s) Details


Os.7575.1.S1_at

Description gb:AU101420
DB_XREF= gi:9865670
DB_XREF=AU101420
CLONE=E30829
TID=Os.7575.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7575 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5288011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7575.1.S1_at--596--4211Chr04:31274154..31274178 (25 bp)
CCGCCTATCAGAGGGCCGTTGATGA
LOC_Os04g52880
Os.7575.1.S1_at--1153--7551Chr04:31274166..31274190 (25 bp)
GGGCCGTTGATGATTAATTACCAGC
LOC_Os04g52880
Os.7575.1.S1_at--670--4491Chr04:31274189..31274213 (25 bp)
GCACCATTAGGGTGGTAATTTCCGT
LOC_Os04g52880
Os.7575.1.S1_at--834--131Chr04:31274218..31274242 (25 bp)
ATTACCTCGGTTGCTCCTAGTTTGA
LOC_Os04g52880
Os.7575.1.S1_at--794--9091Chr04:31274229..31274253 (25 bp)
TGCTCCTAGTTTGATGATTCTTTCC
LOC_Os04g52880
Os.7575.1.S1_at--694--6571Chr04:31274244..31274268 (25 bp)
GATTCTTTCCTCTCTGTCAGTGTGT
LOC_Os04g52880
Os.7575.1.S1_at--266--1111Chr04:31274274..31274298 (25 bp)
AGTGAGTGTGCGTGCCATGGACCAT
LOC_Os04g52880
Os.7575.1.S1_at--1125--9651Chr04:31274314..31274338 (25 bp)
TCAGCACCCCTCTGTAACATAAATA
LOC_Os04g52880
Os.7575.1.S1_at--854--3011Chr04:31274338..31274362 (25 bp)
AATGCTATGGCATGTAGTGTGTGAC
LOC_Os04g52880
Os.7575.1.S1_at--870--3871Chr04:31274364..31274388 (25 bp)
CTGTGAGACGTGTAATCTTTAGGCT
LOC_Os04g52880
Os.7575.1.S1_at--316--3071Chr04:31274377..31274401 (25 bp)
AATCTTTAGGCTTTGCTACTGCATC
LOC_Os04g52880
Target Sequence 
CCGCCTATCAGAGGGCCGTTGATGATTAATTACCAGCACCATTAGGGTGGTAATTTCCGTTTTAATTACCTCGGTTGCTC
CTAGTTTGATGATTCTTTCCTCTCTGTCAGTGTGTGTGTGAGTGAGTGTGCGTGCCATGGACCATTGGAGAACACANTTA
TCAGCACCCCTCTGTAACATAAATAATGCTATGGCATGTAGTGTGTGACNCTGTGAGACGTGTAATCTTTAGGCTTTGCT
ACTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis