Browse Element(s) Details


Os.7597.1.S1_at

Description gb:AK066276.1
DB_XREF= gi:32976294
TID=Os.7597.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061P22, full insert sequence.
FL= gb:AK066276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4053011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed
LOC_Os12g40500Os.27326.1.A1_at8/1112+25023540..25027733expressed protein
LOC_Os12g40510Os.17170.1.S1_at11/1112+25029621..25034664Calcineurin B-like protein 3, putative, expressed
LOC_Os12g40520Os.49666.1.S1_at10/1112+25037100..25044087MATH domain containing protein, expressed
LOC_Os12g40530Os.7597.1.S1_at11/1112+25045352..25048773transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g40540Os.53316.1.S1_at11/1112+25048998..25052450expressed protein
LOC_Os12g40550Os.15144.1.S1_a_at11/1112+25053401..25058014amidase, hydantoinase/carbamoylase family protein, expressed
LOC_Os12g40560Os.8370.1.S1_at11/1112+25058218..25064696FLK, putative, expressed
LOC_Os12g40570Os.19013.1.S1_at11/1112+25067430..25070610WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7597.1.S1_at--1114--9871Chr12:25048212..25048236 (25 bp)
TACATGTGCTGCTCCCATATGAAGA
LOC_Os12g40530
Os.7597.1.S1_at--246--2651Chr12:25048236..25048260 (25 bp)
AAGCCAATGTCGGAGTTCTGAAGTA
LOC_Os12g40530
Os.7597.1.S1_at--161--1191Chr12:25048257..25048281 (25 bp)
AGTAGCTGCAGTTTTCCTGTGAAAA
LOC_Os12g40530
Os.7597.1.S1_at--1020--6771Chr12:25048289..25048313 (25 bp)
GTTAGAGTCTACTCCACCATTCAAA
LOC_Os12g40530
Os.7597.1.S1_at--326--2391Chr12:25048311..25048335 (25 bp)
AAACTTCCTCTTTGCAGATGGGCAC
LOC_Os12g40530
Os.7597.1.S1_at--612--811Chr12:25048418..25048442 (25 bp)
ATGGTGGACCTGCATGTCGGCCTCA
LOC_Os12g40530
Os.7597.1.S1_at--380--7191Chr12:25048433..25048457 (25 bp)
GTCGGCCTCAGCTCATTGGATCAGA
LOC_Os12g40530
Os.7597.1.S1_at--199--6911Chr12:25048629..25048653 (25 bp)
GTATGACTCATCGATTAACCTGTTG
LOC_Os12g40530
Os.7597.1.S1_at--222--2051Chr12:25048689..25048713 (25 bp)
ACTTTCCTTTTTCCTGTAGCTGTGG
LOC_Os12g40530
Os.7597.1.S1_at--739--7071Chr12:25048720..25048744 (25 bp)
GTAATTGTCTTGCTCTTTCCTGTAG
LOC_Os12g40530
Os.7597.1.S1_at--247--6591Chr12:25048749..25048773 (25 bp)
GATTGCTGTGTACTGCTGATCTGTC
LOC_Os12g40530
Target Sequence 
TACATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTT
AGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTG
TAATTTAATAATGTTGTGACAATACTATGTGTTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGG
ATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAA
CCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCNCCAAATATGTGATACTC
TTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAANACCTGTTCACNCTGTACCTTTNTGCACT
TTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis