Browse Element(s) Details


Os.7607.1.S1_at

Description gb:AK067933.1
DB_XREF= gi:32977951
TID=Os.7607.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full insert sequence.
FL= gb:AK067933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4748011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7607.1.S1_at--578--5911Chr07:28381932..28381956 (25 bp)
GAGCTACAATGTGGCGCACCCGAGC
LOC_Os07g47480
Os.7607.1.S1_at--345--4551Chr07:28381980..28382004 (25 bp)
GCCCACGCCGGTAATGTCCATGCAG
LOC_Os07g47480
Os.7607.1.S1_at--83--5051Chr07:28382028..28382052 (25 bp)
GCAGATGTCGTACGGCTACTCGCCG
LOC_Os07g47480
Os.7607.1.S1_at--1022--4511Chr07:28382127..28382151 (25 bp)
GCCGCAGGAGTCTTACAGCAACATG
LOC_Os07g47480
Os.7607.1.S1_at--611--951Chr07:28382159..28382183 (25 bp)
AGGAGAACCCGAGCTCGTGTAGCGT
LOC_Os07g47480
Os.7607.1.S1_at--747--7432Chr07:28382175..28382199 (25 bp)
GTGTAGCGTCATGTAATGCCGCCGC
LOC_Os07g47480
Os.7607.1.S1_at--926--9251Chr07:28382275..28382299 (25 bp)
TCCTCTCGTGTGGTTGCTAGCTAGA
LOC_Os07g47480
Os.7607.1.S1_at--599--151Chr07:28382314..28382338 (25 bp)
ATTAGATGGTCAAACCTCTTCTTGA
LOC_Os07g47480
Os.7607.1.S1_at--1119--3271Chr07:28382324..28382348 (25 bp)
CAAACCTCTTCTTGACCAGACTTTT
LOC_Os07g47480
Os.7607.1.S1_at--1107--3011Chr07:28382368..28382392 (25 bp)
AATGCTCTTAGTGCATCATGTAATG
LOC_Os07g47480
Os.7607.1.S1_at--766--10051Chr07:28382405..28382429 (25 bp)
TAGTACCCTTAATATCTTCTTTTGT
LOC_Os07g47480
Target Sequence 
GAGCTACAATGTGGCGCACCCGAGCGCGAGCNNGTCCTCGTACTACGCGCCCACGCCGGTAATGTCCATGCAGCCGACGC
CCATGCCGCCGCCGCCGCAGATGTCGTACGGCTACTCGCCGTACCCGCCCATGATGATGCCGCCGCCGCCGCCGCCGGAG
TACCTGTACGGCCCGCCGGGCATGCGGTCGTCGCNGCCGCAGGAGTCTTACAGCAACATGTTCAACGAGGAGAACCCGAG
CTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGCGCCGGACACGGGACCGATCGAGCTGTAGTTGACGG
GGAGGCTTCTCAATAGAAGCCTCTCCTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTC
TTCTTGACCAGACTTTTTTTTCTCTTCCCATTTTAAAATGCTCTTAGTGCATCATGTAATGAGATGAGTATTTTAGTACC
CTTAATATCTTCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis