Browse Element(s) Details


Os.7617.1.S1_at

Description gb:BX899391
DB_XREF= gi:40489288
DB_XREF=BX899391
CLONE=p707g08p3
TID=Os.7617.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7617 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195175.1 (A.thaliana) putative cyclase associated protein CAP (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5125010/11cyclase-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51280NANA3+29292939..29296006transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7617.1.S1_at--705--7771NONE
GGTGCAATGCCAGGGTACAGCACCA
NONE
Os.7617.1.S1_at--250--3071Chr03:29266688..29266712 (25 bp)
AATCATACCGGCCTTTCTGGGTTTG
LOC_Os03g51250
Os.7617.1.S1_at--929--10251Chr03:29266667..29266691 (25 bp)
TTTGTCTGTGCATTGGTTGTGTGTT
LOC_Os03g51250
Os.7617.1.S1_at--535--9171Chr03:29266564..29266588 (25 bp)
TGCCCTACTCACTGTGTTGGTTGGT
LOC_Os03g51250
Os.7617.1.S1_at--1082--8811Chr03:29266550..29266574 (25 bp)
TGTTGGTTGGTGTATTTGCATGCCA
LOC_Os03g51250
Os.7617.1.S1_at--1039--191Chr03:29266537..29266561 (25 bp)
ATTTGCATGCCAACAAACTACTGTT
LOC_Os03g51250
Os.7617.1.S1_at--54--6931Chr03:29266512..29266536 (25 bp)
GTATGTTTGAGCTGATTGATGATCA
LOC_Os03g51250
Os.7617.1.S1_at--1054--9051Chr03:29266480..29266504 (25 bp)
TGCATGACTGTCACTATACCTTCTG
LOC_Os03g51250
Os.7617.1.S1_at--143--10191Chr03:29266466..29266490 (25 bp)
TATACCTTCTGTTCCCAACATGCTG
LOC_Os03g51250
Os.7617.1.S1_at--289--10651Chr03:29266455..29266479 (25 bp)
TTCCCAACATGCTGCTCACGTTGAG
LOC_Os03g51250
Os.7617.1.S1_at--497--9091Chr03:29266443..29266467 (25 bp)
TGCTCACGTTGAGCCCAGCGTGCAA
LOC_Os03g51250
Target Sequence 
GGTGCAATGCCAGGGTACAGCACCANCANTATCANTCGACAACACATCTGGATGTCAANTTGTACTTAANCAATGATTCA
CTNTGGAGCCTCCATCACTTCAGCTAAATCTAGTGAAATCAATGTGATGGTTCCNAAGTGGTGCTACTGATGGTGATTGG
GTGGAACATGCTTTGCCCCAACAGTACATCCACAGCTTCAAAGACGGNCAATTCATCACCTCACCGGTGTCTCATTCCGG
AGCATAGCTACAATCATACCGGCCTTTCTGGGTTTGTCTGTGCATTGGTTGTGTGTTGAGAGTTGTAACAGTATTTGATG
TTTGTTGGAGATGCTGTTTGGAGTGTTGGATGGTGCCTACGATTGCTGTTTCTTCTGCCCTACTCACTGTGTTGGTTGGT
GTATTTGCATGCCAACAAACTACTGTTGTATGTTTGAGCTGATTGATGATCATTCTTTCTGCATGACTGTCACTATACCT
TCTGTTCCCAACATGCTGCTCACGTTGAGCCCAGCGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis