Browse Element(s) Details


Os.7628.1.S1_at

Description gb:AK121912.1
DB_XREF= gi:37991535
TID=Os.7628.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106A07, full insert sequence.
FL= gb:AK121912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0928010/11RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09250OsAffx.19571.1.S1_at11/1112+4847895..4849466expressed protein
LOC_Os12g09260Os.45957.4.S1_x_at1/1112+4850629..4854804retrotransposon protein, putative, unclassified
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0009304biological_processtRNA transcription
GO:0005666cellular_componentDNA-directed RNA polymerase III complex
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7628.1.S1_at--553--8551Chr12:4861828..4861852 (25 bp)
TGGAGGAGGATCACACGCTCGCCAA
LOC_Os12g09280
Os.7628.1.S1_at--975--9311Chr12:4861810..4861834 (25 bp)
TCGCCAACTCCGTTAGATTTGTTCT
LOC_Os12g09280
Os.7628.1.S1_at--682--5811Chr12:4860143..4860165 (23 bp)
GACCCAAGGGTAGCATTCTGTGGAT
LOC_Os12g09280
Os.7628.1.S1_at--590--6751NONE
GTTCAGACTACAGGAGACCCAGCAA
NONE
Os.7628.1.S1_at--637--5631Chr12:4859515..4859539 (25 bp)
GACACTGCAGTGACTCAATTTCGGC
LOC_Os12g09280
Os.7628.1.S1_at--372--10591Chr12:4859496..4859520 (25 bp)
TTCGGCAGAACAATCCTACAGGCAT
LOC_Os12g09280
Os.7628.1.S1_at--146--7511Chr12:4859436..4859460 (25 bp)
GTGGTCTTCGCTGCATGGCAACAAT
LOC_Os12g09280
Os.7628.1.S1_at--1090--3171Chr12:4859415..4859439 (25 bp)
CAATTTGCCCAGACATTTTCTATGT
LOC_Os12g09280
Os.7628.1.S1_at--176--7631Chr12:4859315..4859339 (25 bp)
GGGACTTGCATTCATACTTCAGTTT
LOC_Os12g09280
Os.7628.1.S1_at--719--5671Chr12:4859278..4859302 (25 bp)
GACATCTCGGTCATTTATCCTGTTT
LOC_Os12g09280
Os.7628.1.S1_at--1111--9991Chr12:4859254..4859278 (25 bp)
TAGCGATGTATGTTGCCTGGATAAC
LOC_Os12g09280
Target Sequence 
TGGAGGAGGATCACACGCTCGCCAACTCCGTTAGATTTGTTCTTAATCAGGACCCAAGGGTAGCATTCTGTGGATACAGT
ATCCCTCATCCTGCTGACAACAAAGTCAACATAAGAGTTCAGACTACAGGAGACCCAGCAAAGGATGTTCTGAAAGACTC
TTTGCAGGATTTGATGGTGATGTGCCAGCATGTAAGGGGGACATTTGACACTGCAGTGACTCAATTTCGGCAGAACAATC
CTACAGGCATGAACATCGATCAGAACAAAAAGAAGTAGCTTCTGGGTGGTCTTCGCTGCATGGCAACAATTTGCCCAGAC
ATTTTCTATGTAATCGACCAATTAGTTGGTCTATTTGATATGAATGCTCCNTGTATCCATTGTAAGAAATGCTATTATAA
CACAANGGGACTTGCATTCATACTTCAGTTTTCATGGTCAATGGACATCTCGGTCATTTATCCTGTTTAGCGATGTATGT
TGCCTGGATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis