Browse Element(s) Details


Os.18192.1.S1_at

Description gb:CB618799
DB_XREF= gi:29613786
DB_XREF=OSIIEa02P07.r
CLONE=OSIIEa02P07
TID=Os.18192.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18192 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0927011/11bZIP family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09250OsAffx.19571.1.S1_at11/1112+4847895..4849466expressed protein
LOC_Os12g09260Os.45957.4.S1_x_at1/1112+4850629..4854804retrotransposon protein, putative, unclassified
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18192.1.S1_at--518--1211Chr12:4858143..4858167 (25 bp)
AGTTTCACATAGCTTCGCTATCCCT
LOC_Os12g09270
Os.18192.1.S1_at--203--10151Chr12:4858161..4858185 (25 bp)
TATCCCTGTCATACCACTATTTGTG
LOC_Os12g09270
Os.18192.1.S1_at--1013--10791Chr12:4858334..4858358 (25 bp)
TTGTTTTGATGCTAGACCAGTCGGA
LOC_Os12g09270
Os.18192.1.S1_at--796--10371Chr12:4858389..4858413 (25 bp)
TTTTCTTGCTTCCTAGTCAGTTTGA
LOC_Os12g09270
Os.18192.1.S1_at--154--3051Chr12:4858463..4858487 (25 bp)
AATCCGCATTATTACACACCATGTG
LOC_Os12g09270
Os.18192.1.S1_at--544--3311Chr12:4858477..4858501 (25 bp)
CACACCATGTGTTGCTTCTAATAGT
LOC_Os12g09270
Os.18192.1.S1_at--354--4911Chr12:4858490..4858514 (25 bp)
GCTTCTAATAGTTCGGCAGCCGGCA
LOC_Os12g09270
Os.18192.1.S1_at--976--8251Chr12:4858504..4858528 (25 bp)
GGCAGCCGGCACACAAGGACATGAG
LOC_Os12g09270
Os.18192.1.S1_at--626--5971Chr12:4858568..4858592 (25 bp)
GAGAACTGTATGCAGCACATCCAAT
LOC_Os12g09270
Os.18192.1.S1_at--156--10511Chr12:4858669..4858693 (25 bp)
TTAATCGGAACGCAGTGTCATATCT
LOC_Os12g09270
Os.18192.1.S1_at--813--7131Chr12:4858685..4858709 (25 bp)
GTCATATCTGATAAGGCACGCCGTG
LOC_Os12g09270
Target Sequence 
AGTTTCACATAGCTTCGCTATCCCTGTCATACCACTATTTGTGGTCATTAGTTGCATCAGGAGGGGNGCAGCGACGNTGA
ACCTGGNATCACATCCAATGATGAATAGAGCTGGAAAGGCTTAGTAACTATGGANNCAATCCTTATTTCATTCTGAANGT
GCACNTGNCGGTCATCCNCATCTCATANCCATTGTTTTGATGCTAGACCAGTCGGAGGTGTTTAGGGTCTATTTGCNAGC
TTGAAGCTTTTCTTGCTTCCTAGTCAGTTTGAAACAAGGTTCTAATTCATTCATTCAGTCTTTGTTTCATTTGTTATTTC
AAATCCGCATTATTACACACCATGTGTTGCTTCTAATAGTTCGGCAGCCGGCACACAAGGACATGAGCAGAATGTGAGAA
GTGTTGAGATTAATTGTCACNTCTTGGAGAACTGTATGCAGCACATCCAATAAAAGCTTAGTGCTGTTGAAGCATGTTGT
AGTTCNCTCATGTCTTTGAACTGTGTATTGACTCCTGTAATACCAAGTTAATCGGAACGCAGTGTCATATCTGATAAGGC
ACGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis