Browse Element(s) Details


OsAffx.19571.1.S1_at

Description tigr:9640.m00863
TID=OsAffx.19571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0925011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09250OsAffx.19571.1.S1_at11/1112+4847895..4849466expressed protein
LOC_Os12g09260Os.45957.4.S1_x_at1/1112+4850629..4854804retrotransposon protein, putative, unclassified
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19571.1.S1_at--55--4531Chr12:4848748..4848772 (25 bp)
GCCGCGGCTGGCATGTACGACAATG
LOC_Os12g09250
OsAffx.19571.1.S1_at--384--6051Chr12:4848838..4848862 (25 bp)
GAGTTCTTCCCGGAACAAAGCTCGT
LOC_Os12g09250
OsAffx.19571.1.S1_at--48--2191Chr12:4848852..4848876 (25 bp)
ACAAAGCTCGTTTGGGCGGCCGCAA
LOC_Os12g09250
OsAffx.19571.1.S1_at--3--4491Chr12:4848887..4848911 (25 bp)
GCCGGCCATGGGATTCGAGACTGAT
LOC_Os12g09250
OsAffx.19571.1.S1_at--1077--10551Chr12:4848900..4848924 (25 bp)
TTCGAGACTGATGCTCCGACAAGGT
LOC_Os12g09250
OsAffx.19571.1.S1_at--35--671Chr12:4848955..4848979 (25 bp)
ATGAATGGTGGCCATCATGGTCCAC
LOC_Os12g09250
OsAffx.19571.1.S1_at--630--2671Chr12:4848981..4849005 (25 bp)
AAGCGCATTTGGTGATCATGGGCAT
LOC_Os12g09250
OsAffx.19571.1.S1_at--990--5571Chr12:4849032..4849056 (25 bp)
GAAAGGCCCTGGAGATTCAGCTCAT
LOC_Os12g09250
OsAffx.19571.1.S1_at--811--2771Chr12:4849082..4849106 (25 bp)
AAGAGGGTGCACACCTAAGGCACTC
LOC_Os12g09250
OsAffx.19571.1.S1_at--721--9771Chr12:4849097..4849121 (25 bp)
TAAGGCACTCCCAATCGGAGGCAGA
LOC_Os12g09250
OsAffx.19571.1.S1_at--649--2491Chr12:4849388..4849408 (21 bp)
AACAGGCGTATCTAGTGGCGATCAC
LOC_Os12g09250
Target Sequence 
GCCGCGGCTGGCATGTACGACAATGTGTTCGATGGAATGAGGGGAAGAGGTGGAGGAGGACAGCAGGTTGGTTCTTGGGG
TGCCGCACCGGAGTTCTTCCCGGAACAAAGCTCGTTTGGGCGGCCGCAAGGGCAGGGGGGCCGGCCATGGGATTCGAGAC
TGATGCTCCGACAAGGTGGTGGTGGTGGCGGCGGCATGCCGGTGCCGATGAATGGTGGCCATCATGGTCCACCAAGCGCA
TTTGGTGATCATGGGCATGGTTCTTTGCCGAATGGGGTGGACAGGAAAGGCCCTGGAGATTCAGCTCATGATCAGAGGAT
GGGAGCAGAGAGGAAAGAGGGTGCACACCTAAGGCACTCCCAATCGGAGGCAGACACCAAGCGAGCTAAACAGGCGTATC
TAGTGGCGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis