Browse Element(s) Details


OsAffx.19572.1.S1_at

Description tigr:9640.m00865
TID=OsAffx.19572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0927010/11bZIP family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09250OsAffx.19571.1.S1_at11/1112+4847895..4849466expressed protein
LOC_Os12g09260Os.45957.4.S1_x_at1/1112+4850629..4854804retrotransposon protein, putative, unclassified
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19572.1.S1_at--442--2031Chr12:4856940..4856964 (25 bp)
ACTACCCATTTCAGGCAGTATGCTC
LOC_Os12g09270
OsAffx.19572.1.S1_at--648--5031Chr12:4856954..4856978 (25 bp)
GCAGTATGCTCAGAGGTCTCGTGTT
LOC_Os12g09270
OsAffx.19572.1.S1_at--1110--7791Chr12:4856968..4856992 (25 bp)
GGTCTCGTGTTAGAAAGCTCCAGTA
LOC_Os12g09270
OsAffx.19572.1.S1_at--817--1591Chr12:4856983..4857007 (25 bp)
AGCTCCAGTACATTGCAGAGCTCGA
LOC_Os12g09270
OsAffx.19572.1.S1_at--1130--1331Chr12:4857012..4857127 (25 bp)
AGAGTTCAAGCTTTACAGACAGAGG
LOC_Os12g09270
OsAffx.19572.1.S1_at--39--5351Chr12:4857133..4857157 (25 bp)
GAAGTTTCTGCTGAGATGGATTTTC
LOC_Os12g09270
OsAffx.19572.1.S1_at--166--6031Chr12:4857145..4857169 (25 bp)
GAGATGGATTTTCTTGGTCAACAAA
LOC_Os12g09270
OsAffx.19572.1.S1_at--214--6511Chr12:4857181..4857205 (25 bp)
GATTTGGAGAATAAAGCCTTGAAAC
LOC_Os12g09270
OsAffx.19572.1.S1_at--723--5531Chr12:4857201..4857225 (25 bp)
GAAACAACGGCTTGAGAGTCTATCT
LOC_Os12g09270
OsAffx.19572.1.S1_at--1136--6011Chr12:4857214..4857238 (25 bp)
GAGAGTCTATCTCAGGAACACCTAA
LOC_Os12g09270
OsAffx.19572.1.S1_at--410--9611NONE
TCAGGAACACCTAATTAAACGCTTT
NONE
Target Sequence 
ACTACCCATTTCAGGCAGTATGCTCAGAGGTCTCGTGTTAGAAAGCTCCAGTACATTGCAGAGCTCGAGAGAAGAGTTCA
AGCTTTACAGACAGAGGGTGTAGAAGTTTCTGCTGAGATGGATTTTCTTGGTCAACAAAATATCATGTTAGATTTGGAGA
ATAAAGCCTTGAAACAACGGCTTGAGAGTCTATCTCAGGAACACCTAATTAAACGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis