Browse Element(s) Details


Os.7650.1.S1_at

Description gb:AK073337.1
DB_XREF= gi:32983360
TID=Os.7650.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025I20, full insert sequence.
FL= gb:AK073337.1 gb:AK067333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1472011/11Transcription initiation factor IIF, alpha subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14730Os.27673.1.S1_at10/113+7990229..7991617esterase, putative, expressed
LOC_Os03g14750NANA3+7999917..8002929retrotransposon protein, putative, unclassified
LOC_Os03g14760NANA3+8003540..8006473transposon protein, putative, unclassified
LOC_Os03g14770NANA3+8006726..8009734retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7650.1.S1_at--104--6171Chr03:7983220..7983244 (25 bp)
GAGGAGACCTCGTGTTCCTTGGAAC
LOC_Os03g14720
Os.7650.1.S1_at--734--10511Chr03:7983191..7983215 (25 bp)
TTCAGAACCATTTGCCTCAGCGAGA
LOC_Os03g14720
Os.7650.1.S1_at--256--3471Chr03:7983128..7983152 (25 bp)
CAGGGTGGTACTTCGTTTATATGCA
LOC_Os03g14720
Os.7650.1.S1_at--881--10191Chr03:7983111..7983135 (25 bp)
TATATGCACCTATCGCAATGCGAGA
LOC_Os03g14720
Os.7650.1.S1_at--722--6531Chr03:7983076..7983100 (25 bp)
GATTTTATGCCCAGATTTTCGCCTC
LOC_Os03g14720
Os.7650.1.S1_at--691--5631Chr03:7982421..7982445 (25 bp)
GACAGGGAAGTTTTTCTCGCCAATC
LOC_Os03g14720
Os.7650.1.S1_at--574--6191Chr03:7982395..7982419 (25 bp)
GAGGAAAATCTCACACCTGCAGAAG
LOC_Os03g14720
Os.7650.1.S1_at--220--1251Chr03:7982308..7982332 (25 bp)
AGTTGTGTATGCTGTTATGCTCCCC
LOC_Os03g14720
Os.7650.1.S1_at--168--571Chr03:7982267..7982291 (25 bp)
ATGCCTGCCCTTCTATCCTGAAAAT
LOC_Os03g14720
Os.7650.1.S1_at--1061--5651Chr03:7982215..7982239 (25 bp)
GACAGGCTTAACACATATTCTTGAT
LOC_Os03g14720
Os.7650.1.S1_at--501--3571Chr03:7982101..7982125 (25 bp)
CATACTATTGTTTTGTCGTGCTGAA
LOC_Os03g14720
Target Sequence 
GAGGAGACCTCGTGTTCCTTGGAACCAACTTCAGAACCATTTGCCTCAGCGAGAAGTGATACAAATGTATCTCCTATTAC
AGTGGAGGAAATCAGGGTGGTACTTCGTTTATATGCACCTATCGCAATGCGAGATTTTTCAAAAGATTTTATGCCCAGAT
TTTCGCCTCGACTAAGAAGTCCAGAGGACAGGGAAGTTTTTCTCGCCAATCTGAGGAAAATCTCACACCTGCAGAAGATC
AATGGCCAGAAGTACATCATCCTTCTAGAGGAATATAAATAAAATGACAAAACCTGCAGAGTTGTGTATGCTGTTATGCT
CCCCTTGGCTCGAGCTTAGCATGCCTGCCCTTCTATCCTGAAAATTNAGTAGATGCTTGCAGTTGCAGAACGTGACAGGC
TTAACACATATTCTTGATTGANCTCATATTTTTCATACTAGTATACCCCCTTGTAAGTTGTAACAACAAATGATAGTTTG
TCATACTATTAGCAAATGATAGTTTGNCATACTATTGTTTTGTCGTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis