Browse Element(s) Details


Os.7726.1.S1_at

Description gb:AK121128.1
DB_XREF= gi:37990751
TID=Os.7726.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075B19, full insert sequence.
FL= gb:AK105085.1 gb:AK067574.1 gb:AK121128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5231010/11hAT family dimerisation domain containing protein, expressed
LOC_Os05g506249/11hAT family dimerisation domain containing protein, expressed
LOC_Os05g149404/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7726.1.S1_at--448--6513Chr05:28939856..28939880 (25 bp)
GATATCTTGGCCATTCCGATGTCGA
LOC_Os05g50624
Os.7726.1.S1_at--284--3593Chr05:28939867..28939891 (25 bp)
CATTCCGATGTCGATGGTGAGCAGC
LOC_Os05g50624
Os.7726.1.S1_at--217--7773Chr05:28939882..28939906 (25 bp)
GGTGAGCAGCGGCAACTCTATTTTC
LOC_Os05g50624
Os.7726.1.S1_at--257--2532Chr05:28939895..28939919 (25 bp)
AACTCTATTTTCTCTGCTGGAACAG
LOC_Os05g50624
Os.7726.1.S1_at--844--4712Chr05:28939910..28939934 (25 bp)
GCTGGAACAGGAACTCGCATGCTTG
LOC_Os05g50624
Os.7726.1.S1_at--446--953Chr05:28939918..28939942 (25 bp)
AGGAACTCGCATGCTTGATGACTAC
LOC_Os05g50624
Os.7726.1.S1_at--507--5712Chr05:28939937..28939961 (25 bp)
GACTACAGAAGCTCATTGCGTCCAG
LOC_Os05g50624
Os.7726.1.S1_at--239--5412Chr05:28939944..28939968 (25 bp)
GAAGCTCATTGCGTCCAGAAATTGT
LOC_Os05g50624
Os.7726.1.S1_at--790--8671Chr05:28940086..28940110 (25 bp)
TGTGAAGCAACAGCATGTACCAATG
LOC_Os05g50624
Os.7726.1.S1_at--245--1831Chr03:29989794..29989818 (25 bp)
ACGCTTTGTCTTGTAGTATGCCATC
LOC_Os03g52310
Os.7726.1.S1_at--1151--7071Chr03:29989629..29989653 (25 bp)
GTCAATCAATGCAACGTGTCAATTT
LOC_Os03g52310
Target Sequence 
GATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGA
TGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCNTCTGCGCCAAAGACTGGCTTCAGTATTNACCAGCTA
CCCCGGAGGCGCCGAGTACCNCGCTNGTCAAGGTGGATGCACCATAGGNTCGCCGTGATNCCCCCCCCNCCCCCCCNTTC
CTCTTGTGAAGCAACAGCATGTACCAATGNNNCCTATTNNNGNANNNNNCTNCTANNCGTATTTTAGGCAGGGACTATGA
ACTGATTGNGATCNGAGCTTATCCTCCTAGGGTGTAATNTGNTGTATCGNACTCTGTTAACTCNTTCATGTTNTTATGTA
CGCTTTGTCTTGTAGTATGCCATCNGAGTTGTACCTGANATTNCNTGTAGTGTGNGCGCTGGCTGCATAATNTNTATCAG
NTGNTGCCTTATGTNTGNACTTCCCNTCATTATNATCCATTGTAGCATGTGATTGTTCTGTGCNGTTGAGATATGTTCAT
TTGATTGTCAATCAATGCAACGTGTCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis