Browse Element(s) Details


Os.7727.1.S1_at

Description gb:AY580163.1
DB_XREF= gi:46391953
TID=Os.7727.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7727 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative lipase mRNA, complete cds.
PROD=putative lipase
FL= gb:AY580163.1 gb:AK100289.1 gb:AK059511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1191010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g259801/11phospholipid-translocating P-type ATPase, flippase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein
LOC_Os05g11910Os.7727.1.S1_at10/115+6766991..6770735GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11920OsAffx.14647.1.S1_at9/115+6771238..6772094hypothetical protein
LOC_Os05g11930OsAffx.14648.1.S1_at11/115+6772668..6773045hypothetical protein
LOC_Os05g11940OsAffx.442.1.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_s_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_x_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.24587.1.S1_x_at3/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.1.S1_x_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.442.1.S1_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7727.1.S1_at--150--591Chr05:6768541..6768565 (25 bp)
ATGCCAGGGTCATGTACGCTGATTT
LOC_Os05g11910
Os.7727.1.S1_at--559--9951Chr05:6768555..6768579 (25 bp)
TACGCTGATTTCTACTCGCAGGTCA
LOC_Os05g11910
Os.7727.1.S1_at--1008--5011Chr05:6768572..6768596 (25 bp)
GCAGGTCACTGCTATGGTCCGCTCT
LOC_Os05g11910
Os.7727.1.S1_at--749--2511NONE
AACTTCGGGCTGAAATACGGGCTGA
NONE
Os.7727.1.S1_at--293--9851Chr05:6770307..6770331 (25 bp)
TACAACAACAAAGCGCGGTGCGGCA
LOC_Os05g11910
Os.7727.1.S1_at--12--3251Chr05:6770363..6770387 (25 bp)
CAACTACCTCATCTGGGACGGCATC
LOC_Os05g11910
Os.7727.1.S1_at--1028--531Chr05:6770415..6770439 (25 bp)
ATCGCCGATGGCTGGCTCAAGGGCC
LOC_Os05g11910
Os.7727.1.S1_at--460--9311Chr05:6770453..6770477 (25 bp)
TCCCATCCTCCACTGATTTATTAAT
LOC_Os05g11910
Os.7727.1.S1_at--1041--7372Chr11:14340713..14340732 (20 bp)
GTGACCCAATTAATTGTGCACTGTT
LOC_Os11g25980
Os.7727.1.S1_at--262--5111Chr05:6770528..6770552 (25 bp)
GCACTGTTTGCTTAATTAGGCCGAA
LOC_Os05g11910
Os.7727.1.S1_at--129--10091Chr05:6770544..6770568 (25 bp)
TAGGCCGAAGTGTGTGTTTGTATTT
LOC_Os05g11910
Target Sequence 
ATGCCAGGGTCATGTACGCTGATTTCTACTCGCAGGTCACTGCTATGGTCCGCTCTCCCCAAAACTTCGGGCTGAAATAC
GGGCTGAAGGTGTGCTGCGGGGCGGGNAGGGCAGGGGACGTACAACTACAACAACAAAGCGCGGTGCGGCATGTCCGGGT
CCAGCGCCTGCGCCGACCCGGCCAACTACCTCATCTGGGACGGCATCCACCTNACCGAGGCCGCCTACCGCTCCATCGCC
GATGGCTGGCTCAAGGGCCCCTACTGCAACCCTCCCATCCTCCACTGATTTATTAATCCTACATGTATAATATCTGCAGA
GAGATGAGATGTGACCCAATTAATTGTGCACTGTTTGCTTAATTAGGCCGAAGTGTGTGTTTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis