Browse Element(s) Details


Os.7755.1.S1_at

Description gb:AK100891.1
DB_XREF= gi:32986100
TID=Os.7755.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130H08, full insert sequence.
FL= gb:AK100891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2732011/11glycosyl hydrolase family 10 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27290OsAffx.10222.1.S1_x_at2/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.45902.1.A1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.51841.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290OsAffx.22442.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27300Os.27553.1.S1_a_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27300Os.27553.2.S1_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27310OsAffx.5459.1.S1_at11/117+15874487..15879159CRAL/TRIO, N-terminus family protein, expressed
LOC_Os07g27320Os.7755.1.S1_at11/117+15882663..15888337glycosyl hydrolase family 10 protein, putative, expressed
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7755.1.S1_at--525--7491Chr07:15887739..15887763 (25 bp)
GTGGGTGACATCATCTGCGATTCCC
LOC_Os07g27320
Os.7755.1.S1_at--144--7691Chr07:15887783..15887807 (25 bp)
GGGTCTCCCTATCTGGATCACCGAA
LOC_Os07g27320
Os.7755.1.S1_at--216--8911Chr07:15887822..15887846 (25 bp)
TGAGAATGAACACATCCGAGCCGAT
LOC_Os07g27320
Os.7755.1.S1_at--1162--471Chr07:15887848..15887872 (25 bp)
ATCTGGAGGTGTACCTTCGCGAAGC
LOC_Os07g27320
Os.7755.1.S1_at--1063--2471Chr07:15887938..15887962 (25 bp)
AACACGCTCACCTGGTTGATGTTGA
LOC_Os07g27320
Os.7755.1.S1_at--316--10471Chr07:15888025..15888049 (25 bp)
TTACTGGCAACGTGGATCACCATGG
LOC_Os07g27320
Os.7755.1.S1_at--134--1331Chr07:15888063..15888087 (25 bp)
AGAGGCTACCATGGGTCATACACGG
LOC_Os07g27320
Os.7755.1.S1_at--996--7051Chr07:15888114..15888138 (25 bp)
GTAACCAGATCGTTTGTTGTTGACA
LOC_Os07g27320
Os.7755.1.S1_at--563--291Chr07:15888142..15888166 (25 bp)
ATAACGCTGTTCAGGTGGTTACCCT
LOC_Os07g27320
Os.7755.1.S1_at--377--7771Chr07:15888158..15888182 (25 bp)
GGTTACCCTGAACATTTAGCTTGTG
LOC_Os07g27320
Os.7755.1.S1_at--616--3831Chr07:15888218..15888242 (25 bp)
CTGCGACATGTCTTTTTGGATGATT
LOC_Os07g27320
Target Sequence 
GTGGGTGACATCATCTGCGATTCCCTGGACAAGCTCTCCATACTGGGTCTCCCTATCTGGATCACCGAATTGGATGTCAC
GGCTGAGAATGAACACATCCGAGCCGATGATCTGGAGGTGTACCTTCGCGAAGCCTTTGCGCATCCTTCCGTGGAGGGGA
TTATCCTTTGGGGATTCTGGGAGCTGTTCATGTTCCGAGAACACGCTCACCTGGTTGATGTTGATGGAACGATCAATGAG
GCTGGCAAAAGGTACATTGCACTGAAGCAAGAGTGGCTAACCAGCATTACTGGCAACGTGGATCACCATGGANAGTTGAA
NGTTCAGAGGCTACCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGAC
AAGGATAACGCTGTTCAGGTGGTTACCCTGAACATTTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATA
CTGCGACATGTCTTTTTGGATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis