Browse Element(s) Details


Os.7770.1.S1_at

Description gb:AK107722.1
DB_XREF= gi:32992931
TID=Os.7770.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E10, full insert sequence.
FL= gb:AK107722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0503011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05000NANA5+2401920..2408018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05010NANA5+2408335..2411273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05020Os.49479.1.S1_at11/115+2414955..2415600expressed protein
LOC_Os05g05030Os.7770.1.S1_at11/115+2427251..2428050expressed protein
LOC_Os05g05040OsAffx.26738.1.S1_at11/115+2430723..2431318expressed protein
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7770.1.S1_at--365--7831Chr05:2427785..2427809 (25 bp)
GGTAACAACCCTCCAAAAGCTCCAG
LOC_Os05g05030
Os.7770.1.S1_at--568--8371Chr05:2427689..2427713 (25 bp)
GGCGTCGTGTCGATAGAGGACATCA
LOC_Os05g05030
Os.7770.1.S1_at--96--2791Chr05:2427632..2427656 (25 bp)
AAGAGGATGTTCTTTGGCCAAAATT
LOC_Os05g05030
Os.7770.1.S1_at--1114--7251Chr05:2427606..2427630 (25 bp)
GTCCAAATTAGTTTCGAGCTCGATC
LOC_Os05g05030
Os.7770.1.S1_at--856--9371Chr05:2427593..2427617 (25 bp)
TCGAGCTCGATCATGGAAATTAATT
LOC_Os05g05030
Os.7770.1.S1_at--474--6511Chr05:2427540..2427564 (25 bp)
GATATTTGCACTGTATTACGTACGT
LOC_Os05g05030
Os.7770.1.S1_at--66--3151Chr05:2427478..2427502 (25 bp)
AATTAGCCCCTGATCGATGGGCGCT
LOC_Os05g05030
Os.7770.1.S1_at--915--511Chr05:2427466..2427490 (25 bp)
ATCGATGGGCGCTTGTGTTGTAAAA
LOC_Os05g05030
Os.7770.1.S1_at--372--5991Chr05:2427373..2427397 (25 bp)
GAGACTGAACTTCATAGGCTATAGT
LOC_Os05g05030
Os.7770.1.S1_at--718--7931Chr05:2427298..2427322 (25 bp)
GGATTTTCTAGCTAGGTTGCCTACT
LOC_Os05g05030
Os.7770.1.S1_at--553--4851Chr05:2427288..2427312 (25 bp)
GCTAGGTTGCCTACTGTAAGAAATT
LOC_Os05g05030
Target Sequence 
GGTAACAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCAGCGGCGGCNCCNGTCG
CCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACATCAGGGACAGGAAGAGG
ATGTTCTTTGGCCAAAATTNAGTCCAAATTAGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCNGGTCTG
CATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCC
TGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGAATAGCTTGCTATATGTTGACTGTGTTTTCAAGA
GATTTTTAATTTTCAGAGACTGAACTTCATAGGCTATAGTTAGTGCTTATATAAGGATAAGGACGACTGTAAATTAAATT
TTTTTTGTGAGGATTTTCTAGCTAGGTTGCCTACTGTAAGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis