Browse Element(s) Details


Os.7802.1.S1_at

Description gb:AK072809.1
DB_XREF= gi:32982832
TID=Os.7802.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141I19, full insert sequence.
FL= gb:AK104831.1 gb:AK072809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5580011/11sulfate transporter 3.3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified
LOC_Os04g55840Os.55099.1.S1_at11/114+33026126..33032184expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7802.1.S1_at--461--3131Chr04:32996624..32996785 (25 bp)
AATTTTGGATCTGTCAGCTGTCCCT
LOC_Os04g55800
Os.7802.1.S1_at--287--9671Chr04:32996611..32996635 (25 bp)
TCAGCTGTCCCTGCAATTGATACAA
LOC_Os04g55800
Os.7802.1.S1_at--630--331Chr04:32996592..32996616 (25 bp)
ATACAAGTGGCATATCGTTCCTCAT
LOC_Os04g55800
Os.7802.1.S1_at--503--251Chr04:32996581..32996605 (25 bp)
ATATCGTTCCTCATCGACTTGAAGA
LOC_Os04g55800
Os.7802.1.S1_at--127--1271Chr04:32996292..32996316 (25 bp)
AGATAGTCTGTACTTAACCACTGGG
LOC_Os04g55800
Os.7802.1.S1_at--998--3651Chr04:32996257..32996281 (25 bp)
CTTCACTCTCTACATTTTCCAAGAT
LOC_Os04g55800
Os.7802.1.S1_at--991--10411Chr04:32996193..32996217 (25 bp)
TTATTATTCTAACTGCGCTGCTAAG
LOC_Os04g55800
Os.7802.1.S1_at--612--9011Chr04:32996166..32996190 (25 bp)
TGCAATGCAAGATTTTCCACCCTGT
LOC_Os04g55800
Os.7802.1.S1_at--765--291Chr04:32996131..32996155 (25 bp)
ATAGAAGTGCCTCCAGCAACGTATT
LOC_Os04g55800
Os.7802.1.S1_at--702--3411Chr04:32996118..32996142 (25 bp)
CAGCAACGTATTTCCCGGTTATGTT
LOC_Os04g55800
Os.7802.1.S1_at--495--751Chr04:32996026..32996050 (25 bp)
ATGTACCTTGTGCATACCCATCAGT
LOC_Os04g55800
Target Sequence 
AATTTTGGATCTGTCAGCTGTCCCTGCAATTGATACAAGTGGCATATCGTTCCTCATCGACTTGAAGAAATCAACAGAGA
AGCATGGACTAGAGCTTATACTTGTGAATCCAACTGGAGAGGTCATGGAGAAGATACAACGAGCGAATGATGCTCATGGT
CATTTCAAATCAGATAGTCTGTACTTAACCACTGGGGAAGCAGTGGCTTCACTCTCTACATTTTCCAAGATGACAGCGCC
TTAGAGCTGATTCTAAGGTTGTCATTTTCATTATTATTCTAACTGCGCTGCTAAGTTTGCAATGCAAGATTTTCCACCCT
GTTCTCTCAGCAATAGAAGTGCCTCCAGCAACGTATTTCCCGGTTATGTTTGTACCCCCAATCTTCCGAGGTATTCAGAC
TATGTGATGCAAACTTGGCAGTAGAAGTACTGNGAATATGTACCTTGTGCATACCCATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis