Browse Element(s) Details


Os.7812.2.S1_x_at

Description gb:NM_193231.1
DB_XREF= gi:34913545
GEN=OJ1029_F04.24
TID=Os.7812.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7812 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative PRLI-interacting factor K (OJ1029_F04.24), mRNA.
PROD=putative PRLI-interacting factor K
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3504011/11PRLI-interacting factor K, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35050Os.41024.1.S1_x_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35050Os.16956.1.S1_s_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7812.2.S1_x_at--277--8311Chr01:19718541..19718565 (25 bp)
GGCTAGTGCCTCATCTAGTGTTGAT
LOC_Os01g35040
Os.7812.2.S1_x_at--170--10171Chr01:19718601..19718625 (25 bp)
TATATCCAACCGAACTTCACTACTT
LOC_Os01g35040
Os.7812.2.S1_x_at--448--811Chr01:19718669..19718693 (25 bp)
ATGGGTGTGGTGTTGTTCTTCGAAA
LOC_Os01g35040
Os.7812.2.S1_x_at--691--2871Chr01:19718725..19718749 (25 bp)
AAGTGTGGGCAAGCTTTCCAGCAGA
LOC_Os01g35040
Os.7812.2.S1_x_at--293--5571Chr01:19718769..19718793 (25 bp)
GAAAGTTTTCCATGAGCCACTACAA
LOC_Os01g35040
Os.7812.2.S1_x_at--220--10291Chr01:19719203..19719227 (25 bp)
TTTGCGCTTGATTGTGTGCCGATTT
LOC_Os01g35040
Os.7812.2.S1_x_at--811--1431Chr01:19719254..19719278 (25 bp)
AGAACCACTTGATGCTCGGGATCGG
LOC_Os01g35040
Os.7812.2.S1_x_at--278--6411Chr01:19719273..19719297 (25 bp)
GATCGGCTTCGCAACATGTGTGAGC
LOC_Os01g35040
Os.7812.2.S1_x_at--291--6911Chr01:19719304..19719328 (25 bp)
GTATCTGTGGATCCAGGACTGCACC
LOC_Os01g35040
Os.7812.2.S1_x_at--89--5731Chr01:19719320..19719344 (25 bp)
GACTGCACCATGTGATTCTTGTGGA
LOC_Os01g35040
Os.7812.2.S1_x_at--208--9591Chr01:19719336..19719360 (25 bp)
TCTTGTGGACGGTCAGTCATGCTGA
LOC_Os01g35040
Target Sequence 
GGCTAGTGCCTCATCTAGTGTTGATGTTGATTCAGTGGTGTGCAAGAACTGCAAACGCTATATATCCAACCGAACTTCAC
TACTTCATGAAGCATACTGTGTGAGACACAATGTTGTTTGCATGCATGATGGGTGTGGTGTTGTTCTTCGAAAGGAGGAA
GCAACAGATCACGTGCATTGCAACAAGTGTGGGCAAGCTTTCCAGCAGAGAGAAATGGAGAAGCACATGAAAGTTTTCCA
TGAGCCACTACAATGCCCTTGTGGGGTGGTCCTTGAAAAGGAAGATATGGTTCAACACCAATCCTCAACCTGCCCTTTGC
GCTTGATTGTGTGCCGATTTTGTGGTGACACTGTTCAAGCTGGTGGAGAACCACTTGATGCTCGGGATCGGCTTCGCAAC
ATGTGTGAGCACGAGAGTATCTGTGGATCCAGGACTGCACCATGTGATTCTTGTGGACGGTCAGTCATGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7812.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis