Browse Element(s) Details


Os.7838.1.S1_at

Description gb:AK109279.1
DB_XREF= gi:32994488
TID=Os.7838.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B03, full insert sequence.
FL= gb:AK109279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2093010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20900Os.18314.1.S1_at11/119+12579292..12581402RING-H2 finger protein ATL3I, putative, expressed
LOC_Os09g20910OsAffx.17810.1.S1_at10/119+12581818..12589897expressed protein
LOC_Os09g20910Os.49904.1.S1_x_at9/119+12581818..12589897expressed protein
LOC_Os09g20920OsAffx.29949.1.S1_x_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20920OsAffx.29949.1.S1_at1/119+12591735..12592166hypothetical protein
LOC_Os09g20930Os.7838.1.S1_at10/119+12599864..12601388expressed protein
LOC_Os09g20940NANA9+12605827..12606381hypothetical protein
LOC_Os09g20950Os.45902.1.A1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20950Os.51841.1.S1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7838.1.S1_at--565--4711Chr09:12600932..12600956 (25 bp)
GCGGCCTCTCCGGTGAGTAATCGAG
LOC_Os09g20930
Os.7838.1.S1_at--80--5951Chr09:12600957..12600981 (25 bp)
GAGCAGCCATGTCGTTGTTCAGTTC
LOC_Os09g20930
Os.7838.1.S1_at--324--7891Chr09:12601027..12601051 (25 bp)
GGTTAATAATTGATACTGCGGCTTG
LOC_Os09g20930
Os.7838.1.S1_at--485--3831Chr09:12601042..12601066 (25 bp)
CTGCGGCTTGATACCAATATGCTTT
LOC_Os09g20930
Os.7838.1.S1_at--201--271Chr09:12601058..12601082 (25 bp)
ATATGCTTTGGTTTATCCAATCCAG
LOC_Os09g20930
Os.7838.1.S1_at--574--6071Chr09:12601139..12601163 (25 bp)
GAGTAATTAAGTCCCCGTTGATACG
LOC_Os09g20930
Os.7838.1.S1_at--647--10331Chr09:12601181..12601205 (25 bp)
TTTCAGTTTCAGAAGCTCACACAAT
LOC_Os09g20930
Os.7838.1.S1_at--980--3291Chr09:12601207..12601231 (25 bp)
CACAAAATCTGACCCATTCAACCAT
LOC_Os09g20930
Os.7838.1.S1_at--825--551Chr09:12601230..12601254 (25 bp)
ATCCGTGCTGTTCCGGCGATGAATT
LOC_Os09g20930
Os.7838.1.S1_at--140--8951NONE
TGACGTACCAGATGTATGCCACGAT
NONE
Os.7838.1.S1_at--829--4391Chr09:12601324..12601348 (25 bp)
GCCACGATGGGCTTATTTTCCCTTT
LOC_Os09g20930
Target Sequence 
GCGGCCTCTCCGGTGAGTAATCGAGGAGCAGCCATGTCGTTGTTCAGTTCATTTATGAAACAATTTTAGTGTCATTTAGT
GTATTTGGGTTGTGCGGTTAATAATTGATACTGCGGCTTGATACCAATATGCTTTGGTTTATCCAATCCAGAATTAGGAA
GGAATCATATGTGTGTGGTAAATGATTCTTGAAAATGGTTTGGGTACGAGTAATTAAGTCCCCGTTGATACGTCGGTTTC
AGGAAATTATTTCAGTTTCAGAAGCTCACACAATTCACAAAATCTGACCCATTCAACCATCCGTGCTGTTCCGGCGATGA
ATTTAGCTTGTTATAAGCTGGTACAATATGAGCTAAATACAGTAGGATGAGAAATTGACGTACCAGATGTATGCCACGAT
GGGCTTATTTTCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis