Browse Element(s) Details


Os.7879.2.S1_at

Description gb:AK063706.1
DB_XREF= gi:32973724
TID=Os.7879.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7879 (NCBI UniGene Cluster)
UG_TITLE=Shoot GS2 mRNA for chloroplastic glutamine synthetase (EC 6.3.1.2) (clone lambda-GS31)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-H04, full insert sequence.
FL= gb:AK063706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5640011/11Glutamine synthetase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004356molecular_functionglutamate-ammonia ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7879.2.S1_at--1020--3471Chr04:33409232..33409256 (25 bp)
CAGGTTTCATTATCTTCTTCTGATG
LOC_Os04g56400
Os.7879.2.S1_at--488--9571Chr04:33409217..33409241 (25 bp)
TCTTCTGATGTTAAAGTATCCTGCA
LOC_Os04g56400
Os.7879.2.S1_at--1001--6871Chr04:33409202..33409226 (25 bp)
GTATCCTGCAGCATAAGAACAAAGC
LOC_Os04g56400
Os.7879.2.S1_at--167--1431Chr04:33409175..33409199 (25 bp)
AGAACACTTAACACAGCTTTGCTGA
LOC_Os04g56400
Os.7879.2.S1_at--1039--10271Chr04:33409158..33409182 (25 bp)
TTTGCTGACATTTTTCCTTTGAGAG
LOC_Os04g56400
Os.7879.2.S1_at--907--5491Chr04:33409136..33409160 (25 bp)
GAGAACAACTTTGTTGACCGAACTA
LOC_Os04g56400
Os.7879.2.S1_at--599--5791Chr04:33409121..33409145 (25 bp)
GACCGAACTAATGCCTATTCAGAGA
LOC_Os04g56400
Os.7879.2.S1_at--342--7431Chr04:33409053..33409077 (25 bp)
GTGTAAGACCTAAAATACCAATCCA
LOC_Os04g56400
Os.7879.2.S1_at--248--311Chr04:33409039..33409063 (25 bp)
ATACCAATCCAAATACGGACCGAAT
LOC_Os04g56400
Os.7879.2.S1_at--129--371Chr04:33409014..33409038 (25 bp)
ATCAAGTGTTCGTAGGTGTTAAATC
LOC_Os04g56400
Os.7879.2.S1_at--43--1893Chr06:3549275..3549300 (24 bp)
ACGTTTGCTCTCACGGTCTAGAAAA
NONE
Target Sequence 
CAGGTTTCATTATCTTCTTCTGATGTTAAAGTATCCTGCAGCATAAGAACAAAGCTTAGAACACTTAACACAGCTTTGCT
GACATTTTTCCTTTGAGAGAACAACTTTGTTGACCGAACTAATGCCTATTCAGAGACAAAAATAAATTCCTTGGGAATTT
GATAGGAAAGAAAACATATGTGTAAGACCTAAAATACCAATCCAAATACGGACCGAATATCAAGTGTTCGTAGGTGTTAA
ATCTATTATATCTATAAAGTAATAGAAAAAGAAGCCTCCACGTTTGCTCTCACGGTCTAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7879.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis