Browse Element(s) Details


Os.7907.1.S2_at

Description gb:AK068130.1
DB_XREF= gi:32978148
TID=Os.7907.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.7907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ferredoxin-dependent glutamate synthase, chloroplast precursor (P0047B07.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full insert sequence.
FL= gb:AK120896.1 gb:AK068130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4646011/11Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006537biological_processglutamate biosynthesis
GO:0009853biological_processphotorespiration
GO:0042128biological_processnitrate assimilation
GO:0009536cellular_componentplastid
GO:0016040molecular_functionglutamate synthase (NADH) activity
GO:0016041molecular_functionglutamate synthase (ferredoxin) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7907.1.S2_at--611--1971Chr07:27721838..27721862 (25 bp)
ACTGCAATTCCCAAGTGATCAGATT
LOC_Os07g46460
Os.7907.1.S2_at--67--6731Chr07:27721798..27721822 (25 bp)
GTTCTTTGGTACTTTCCAGGTGATT
LOC_Os07g46460
Os.7907.1.S2_at--337--1051Chr07:27721781..27721805 (25 bp)
AGGTGATTTTTTCCTGGGACCGCAT
LOC_Os07g46460
Os.7907.1.S2_at--899--2551Chr07:27721738..27721762 (25 bp)
AACTGGCATACTTGTGAAGCACCGA
LOC_Os07g46460
Os.7907.1.S2_at--754--4631Chr07:27721697..27721721 (25 bp)
GCGATTTTGTGGAAGCTCTGCCCAA
LOC_Os07g46460
Os.7907.1.S2_at--65--511Chr07:27721644..27721668 (25 bp)
ATCGTGGAGGATTCTTCTTTGCGCC
LOC_Os07g46460
Os.7907.1.S2_at--536--6851Chr07:27721577..27721601 (25 bp)
GTTTGCTGACGCTAGGTTGCTATTT
LOC_Os07g46460
Os.7907.1.S2_at--723--2391Chr07:27721527..27721551 (25 bp)
AAACTTCTCCATTCCTGTACAGGAT
LOC_Os07g46460
Os.7907.1.S2_at--36--7931Chr07:27721506..27721530 (25 bp)
GGATTCGTGTCCTATGTAATCGTAT
LOC_Os07g46460
Os.7907.1.S2_at--268--10871Chr07:27721479..27721503 (25 bp)
TTGGTTCTGGACACATTAGTTCTTA
LOC_Os07g46460
Os.7907.1.S2_at--1043--4611Chr07:27721428..27721452 (25 bp)
GCGAGTCGCATGTGCATACAGCTAT
LOC_Os07g46460
Target Sequence 
ACTGCAATTCCCAAGTGATCAGATTAGACAACAGGANGGTGTTCTTTGGTACTTTCCAGGTGATTTTTTCCTGGGACCGC
ATCAAGGAAAACAAAATAACAACTGGCATACTTGTGAAGCACCGAAGTGCCCCCAAAGACTGCGATTTTGTGGAAGCTCT
GCCCAAGGCANCTTTTGAAACGAAGTTTCACATGATCGTGGAGGATTCTTCTTTGCGCCCTTGCACTTGCACGNCCTAGT
TNACCACCCCCCTGTAAATTGGTTTGCTGACGCTAGGTTGCTATTTGCAGAGGCAGTGAAGACACACTTCTAAACTTCTC
CATTCCTGTACAGGATTCGTGTCCTATGTAATCGTATTTTTGGTTCTGGACACATTAGTTCTTACATTTATACCCGTCCN
GTGGGGGCATGCGAGTCGCATGTGCATACAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7907.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis