Browse Element(s) Details


Os.7907.2.S1_x_at

Description gb:NM_185989.1
DB_XREF= gi:34899063
GEN=P0047B07.34
TID=Os.7907.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7907 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ferredoxin-dependent glutamate synthase, chloroplast precursor (P0047B07.34), mRNA.
PROD=putative ferredoxin-dependent glutamatesynthase, chloroplast precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4646011/11Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006537biological_processglutamate biosynthesis
GO:0009853biological_processphotorespiration
GO:0042128biological_processnitrate assimilation
GO:0009536cellular_componentplastid
GO:0016040molecular_functionglutamate synthase (NADH) activity
GO:0016041molecular_functionglutamate synthase (ferredoxin) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7907.2.S1_x_at--748--5891Chr07:27722924..27722948 (25 bp)
GAGCTGGTTGTAGTTCCTGTAGAAA
LOC_Os07g46460
Os.7907.2.S1_x_at--543--7031Chr07:27722863..27722887 (25 bp)
GTAACACTTGTCTGTATGGAGCTAC
LOC_Os07g46460
Os.7907.2.S1_x_at--160--6791Chr07:27722792..27722816 (25 bp)
GTTAGAAACTCCCTTGGTCAAGCAG
LOC_Os07g46460
Os.7907.2.S1_x_at--138--5112Chr07:28630338..28630362 (25 bp)
GCACTGGAGATCATTGCTGCGAGTA
NONE
Os.7907.2.S1_x_at--89--7731Chr07:27722591..27722615 (25 bp)
GGTGGCCTTGCCTATATTCTAGATG
LOC_Os07g46460
Os.7907.2.S1_x_at--491--6291Chr07:27722565..27722588 (24 bp)
GATGATACACTCGTCCCAAAGGTTA
LOC_Os07g46460
Os.7907.2.S1_x_at--52--1131Chr07:27722147..27722171 (25 bp)
AGTGAATGCTCCAGCCGGGCAGATG
LOC_Os07g46460
Os.7907.2.S1_x_at--981--2971Chr07:27721969..27721993 (25 bp)
AATGGGAGGCATATCTGCCACTCTT
LOC_Os07g46460
Os.7907.2.S1_x_at--558--10611Chr07:27721946..27721970 (25 bp)
TTCTGGCAACTGGTACCACCAAGTG
LOC_Os07g46460
Os.7907.2.S1_x_at--850--1451Chr07:27721920..27721944 (25 bp)
AGAAGACTCTCCTGAAGCTTGTGCC
LOC_Os07g46460
Os.7907.2.S1_x_at--1063--4911Chr07:27721904..27721928 (25 bp)
GCTTGTGCCGAGTTTGAACGAGTAC
LOC_Os07g46460
Target Sequence 
GAGCTGGTTGTAGTTCCTGTAGAAAAAACAGGATTTGTTCCTGAGGATGCTGCTATAGTTGGTAACACTTGTCTGTATGG
AGCTACTGGTGGTCAGGTATTTGTGAGAGGCAAAACAGGTGAAAGATTTGCAGTTAGAAACTCCCTTGGTCAAGCAGTGG
TTGAGGGCACTGGAGATCATTGCTGCGAGTACATGACTGGTGGCTGTGTAGTTGTACTTGGCGTTGGGAGGAATGTTGCA
GCTGGAATGACGGGTGGCCTTGCCTATATTCTAGATGAGGATGATACACTCGTCCCAAAGGTTAACAAGGAGATTGTGAA
GATGCAGAGAGTGAATGCTCCAGCCGGGCAGATGCAGCTGAAGGGCTTGATTGAGGCTTACGTTGAAAAAACAGGCAGCG
AGAAAGGTGCCACGATTTTGAGAGAATGGGAGGCATATCTGCCACTCTTCTGGCAACTGGTACCACCAAGTGAAGAAGAC
TCTCCTGAAGCTTGTGCCGAGTTTGAACGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7907.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis