Browse Element(s) Details


Os.7955.1.A1_at

Description gb:CR289423
DB_XREF= gi:44675989
DB_XREF=CR289423
CLONE=p804c10p3
TID=Os.7955.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7955 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein L31 gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g395006/1160S ribosomal protein L31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7955.1.A1_at--562--4471NONE
GCCTCCACAGCTGTACATTCAAGAA
NONE
Os.7955.1.A1_at--945--2931Chr08:24860562..24860586 (25 bp)
AAGGCTATGGGCACTACAGATGTCA
LOC_Os08g39500
Os.7955.1.A1_at--395--6711Chr08:24860475..24860499 (25 bp)
GTTCGTGTGAGGATCGCCCGCAAGA
LOC_Os08g39500
Os.7955.1.A1_at--120--3911Chr08:24860398..24860422 (25 bp)
CGAGGTCCCTCCTGAGGGTTTGAAG
LOC_Os08g39500
Os.7955.1.A1_at--393--1891Chr08:24860346..24860370 (25 bp)
ACGGATTAAGCTTTACCTTCTCTGC
LOC_Os08g39500
Os.7955.1.A1_at--262--3671Chr08:24860336..24860360 (25 bp)
CTTTACCTTCTCTGCATCTTTAGAA
LOC_Os08g39500
Os.7955.1.A1_at--430--7151Chr08:24860235..24860259 (25 bp)
GTCTATCTTCGTATATATTCCATGG
LOC_Os08g39500
Os.7955.1.A1_at--556--6931Chr08:24860192..24860216 (25 bp)
GTAGTGTTCATTATTGCCTCTGGTA
NONE
Os.7955.1.A1_at--187--8591Chr08:24860160..24860184 (25 bp)
TGGTACTCAATGCTCCAGTTTGGGA
NONE
Os.7955.1.A1_at--476--8151Chr08:24860138..24860162 (25 bp)
GGAAATCGCCTGTGGTTGCTCGTCA
NONE
Os.7955.1.A1_at--442--7511Chr08:24860127..24860151 (25 bp)
GTGGTTGCTCGTCATATTCATACAT
NONE
Target Sequence 
GCCTCCACAGCTGTACATTCAAGAAGAAGGCGCCCAATGCCATCAAAGAGATCAGGAAGTTTGCGCAGAAGGCTATGGGC
ACTACAGATGTCAGGGTCGATGTGAAGCTCAACAAGCACATCTGGAGCAGTNGGATCAGGAGTGTGCCGCGGAGGGTTCG
TGTGAGGATCGCCCGCAAGAGGAATGACGAGGAGGATGCCAAGGAAGAGCTCTACTCTCTGGTCACTGTGGCCGAGGTCC
CTCCTGAGGGTTTGAAGGGGCTGGGAACCAAGGTTGTTGACGAAACGGATTAAGCTTTACCTTCTCTGCATCTTTAGAAT
GAGTTTAGTTTGAATTGCAACATCAAACTTTATTTTGGCAAATCAGAAGTTTTGGACTATAGCACATCNCAANCTGTCTA
TCTTCGTATATATTCCATGGATTTACCTTTTTGTTCATGTAGTGTTCATTATTGCCTCTGGTATAAGCTNTGGTACTCAA
TGCTCCAGTTTGGGAAATCGCCTGTGGTTGCTCGTCATATTCATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7955.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis