Browse Element(s) Details


Os.799.1.S1_at

Description gb:AK102782.1
DB_XREF= gi:32987991
TID=Os.799.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0436E04.7 (P0436E04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K12, full insert sequence.
FL= gb:AK102782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0139011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.799.1.S1_at--571--7031Chr01:197278..197302 (25 bp)
GTAACGATGATACACTAGGCAGGAT
LOC_Os01g01390
Os.799.1.S1_at--606--951Chr01:197314..197338 (25 bp)
AGGACTAGAATCCAGAGTACCCCTG
LOC_Os01g01390
Os.799.1.S1_at--921--4451Chr01:197344..197368 (25 bp)
GCCTAGCGTGTGTGCATCGTTGTTA
LOC_Os01g01390
Os.799.1.S1_at--900--7031Chr01:197369..197393 (25 bp)
GTACAAGTGAGAGTCTTTAGGCGAA
LOC_Os01g01390
Os.799.1.S1_at--821--1971Chr01:197431..197455 (25 bp)
ACTGCCAGATAGATGATGCTCCTCC
LOC_Os01g01390
Os.799.1.S1_at--1146--1291Chr01:197441..197465 (25 bp)
AGATGATGCTCCTCCTGTATTTCTA
LOC_Os01g01390
Os.799.1.S1_at--782--2011Chr01:197503..197527 (25 bp)
ACTACTGTAGTAGACACTCTAGTAC
LOC_Os01g01390
Os.799.1.S1_at--1039--2851Chr01:197540..197564 (25 bp)
AAGTGCTCATGGCTTGTGCTTCCTG
LOC_Os01g01390
Os.799.1.S1_at--153--10831Chr01:197553..197577 (25 bp)
TTGTGCTTCCTGAGTGATGGCTAAT
LOC_Os01g01390
Os.799.1.S1_at--753--6231Chr01:197568..197592 (25 bp)
GATGGCTAATTTATGATCGCCCCTT
LOC_Os01g01390
Os.799.1.S1_at--882--711Chr01:197580..197604 (25 bp)
ATGATCGCCCCTTGTGTTATGGTGG
LOC_Os01g01390
Target Sequence 
GTAACGATGATACACTAGGCAGGATAATAAGTAGTAAGGACTAGAATCCAGAGTACCCCTGGCCAGGCCTAGCGTGTGTG
CATCGTTGTTAGTACAAGTGAGAGTCTTTAGGCGAAGAGTAGGCCATGCTGGTGATTTGTTCTGGGGATTTCTACTGCCA
GATAGATGATGCTCCTCCTGTATTTCTACTATTTAAATTCCAAGTTCCTCTTTTGTATACTATATACTACTGTAGTAGAC
ACTCTAGTACAAGTGAGGCAACAAGTGCTCATGGCTTGTGCTTCCTGAGTGATGGCTAATTTATGATCGCCCCTTGTGTT
ATGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis