Browse Element(s) Details


Os.8014.2.S1_x_at

Description gb:NM_195179.1
DB_XREF= gi:37531717
TID=Os.8014.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8014 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0095J15.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1018011/11CMV 1a interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8014.2.S1_x_at--724--5291Chr10:5359840..5359861 (22 bp)
GAAGGCAACCTGTCATGGCTGGCTG
LOC_Os10g10180
Os.8014.2.S1_x_at--682--1591Chr10:5360019..5360043 (25 bp)
AGCTGAACCGGCAACGATGTCGATT
LOC_Os10g10180
Os.8014.2.S1_x_at--607--2791Chr10:5360047..5360071 (25 bp)
AAGAGGGCCATACCTGACGCTGGTT
LOC_Os10g10180
Os.8014.2.S1_x_at--448--3171Chr10:5360091..5360115 (25 bp)
AATTGTTCGCGGAAACTGGCTGAAT
LOC_Os10g10180
Os.8014.2.S1_x_at--982--5671Chr10:5360164..5360188 (25 bp)
GACATTCTGGATATTGGCTGCTCCG
LOC_Os10g10180
Os.8014.2.S1_x_at--860--291Chr10:5360205..5360229 (25 bp)
ATACCTGGCTGAGAAGTTCCCTTCA
LOC_Os10g10180
Os.8014.2.S1_x_at--167--10851Chr10:5360773..5360795 (23 bp)
TTGGTTTAGATCTTTCACCCTACTT
LOC_Os10g10180
Os.8014.2.S1_x_at--510--3031Chr10:5360839..5360863 (25 bp)
AATCCTATCCGTTGGGTTCATGCAA
LOC_Os10g10180
Os.8014.2.S1_x_at--442--1051Chr10:5360877..5360901 (25 bp)
AGGGTTGCCCTCAAATTCATTCGAC
LOC_Os10g10180
Os.8014.2.S1_x_at--995--9311Chr10:5360908..5361204 (25 bp)
TCCCTTGCTTATGTGCCAAAATCCA
LOC_Os10g10180
Os.8014.2.S1_x_at--239--5371Chr10:5361328..5361352 (25 bp)
GAAGAGCACTGAACCGTTTCTGGAT
LOC_Os10g10180
Target Sequence 
GAAGGCAACCTGTCATGGCTGGCTGCAGCTGAAGCTGAACCGGCAACGATGTCGATTGCTAAGAGGGCCATACCTGACGC
TGGTTCAATTGAAGAAGCCAATCAAATTGTTCGCGGAAACTGGCTGAATGCAATTGAGGAGCATCACCTGAAATACTCGG
GGAATTGTCAGATCAATGACATTCTGGATATTGGCTGCTCCGTTGGAGTAAGCACCAGATACCTGGCTGAGAAGTTCCCT
TCAGCGAGAACTGTTGGTTTAGATCTTTCACCCTACTTCCTTGCGGTTGCGGCACATAAGGAAGAAAAATTGTCCCGGCA
AAATCCTATCCGTTGGGTTCATGCAAACGGTGAAGCCACAGGGTTGCCCTCAAATTCATTCGACCTAGTCTCCCTTGCTT
ATGTGCCAAAATCCAAAGTACTTCAGGAACTATCACCAGTGCTATTTACTCTGATGAAGAGCACTGAACCGTTTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8014.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis